FEAT-1b: Inzuchtkoeffizient endpoints via Wright path method
- PedigreeCalculator: pure, EF-free Wright path-method engine (recursive F_A,
per-common-ancestor contributions, generationsAvailable, cycle guards)
- InbreedingService: loads pedigree from ApplicationContext shadow FKs
(Gerbils.LitterId, Litters.FatherId/MotherId) into in-memory maps
- InbreedingController: GET /gerbils/{id}/inbreeding-coefficient,
POST /genetics/test-inbreeding (hypothetical pairing for Probeverpaarung)
- Injects ApplicationContext directly; no Program.cs change (Dwight owns it)
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
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GerbilManagerWebAPI/Genetics/InbreedingService.cs
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74
GerbilManagerWebAPI/Genetics/InbreedingService.cs
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using GerbilManagerWebAPI.Models;
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using Microsoft.EntityFrameworkCore;
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namespace GerbilManagerWebAPI.Genetics
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{
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/// <summary>
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/// Loads the pedigree out of the database into in-memory lookups (the home dataset
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/// is small) and delegates the actual maths to <see cref="PedigreeCalculator"/>.
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///
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/// Parent links live in EF shadow foreign keys: a gerbil's birth litter is
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/// <c>Gerbils.LitterId</c>; that litter's parents are <c>Litters.FatherId</c> and
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/// <c>Litters.MotherId</c>.
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/// </summary>
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public sealed class InbreedingService
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{
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private readonly ApplicationContext _db;
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public InbreedingService(ApplicationContext db) => _db = db;
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/// <summary>F for an existing gerbil, or null if no such gerbil exists.</summary>
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public InbreedingResult? ForGerbil(Guid id)
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{
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var calculator = BuildCalculator();
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return calculator.Contains(id) ? calculator.ForIndividual(id) : null;
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}
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/// <summary>F for the hypothetical offspring of the given sire and dam.</summary>
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public InbreedingResult ForPairing(Guid? fatherId, Guid? motherId)
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{
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return BuildCalculator().ForOffspringOf(fatherId, motherId);
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}
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private PedigreeCalculator BuildCalculator()
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{
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var litters = _db.Set<Litter>()
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.Select(l => new
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{
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l.Id,
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FatherId = EF.Property<Guid?>(l, "FatherId"),
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MotherId = EF.Property<Guid?>(l, "MotherId"),
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})
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.ToDictionary(l => l.Id, l => (l.FatherId, l.MotherId));
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var gerbils = _db.Set<Gerbil>()
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.Select(g => new
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{
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g.Id,
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g.Name,
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LitterId = EF.Property<Guid?>(g, "LitterId"),
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})
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.ToList();
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var parents = new Dictionary<Guid, (Guid? Father, Guid? Mother)>(gerbils.Count);
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var names = new Dictionary<Guid, string>(gerbils.Count);
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foreach (var g in gerbils)
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{
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names[g.Id] = g.Name;
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Guid? father = null;
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Guid? mother = null;
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if (g.LitterId is Guid litterId && litters.TryGetValue(litterId, out var litterParents))
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{
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father = litterParents.FatherId;
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mother = litterParents.MotherId;
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}
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parents[g.Id] = (father, mother);
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}
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return new PedigreeCalculator(parents, names);
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}
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}
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}
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