god maintains tools/import/conflict-decisions.json as Julian/his wife answer
the D-conflicts. extract.py now consumes it (apply_conflict_decisions): for an
animal matching normalize(name)+dob, it clears the conflict, marks
resolvedByDecision, and — when the decision carries a `genotype` (breeder
notation, parsed via genotype.py) and/or `farbschlag` — treats those as
AUTHORITATIVE. Tolerates a missing/empty/garbled file. Genuinely-unresolved
conflicts stay quarantined.
Loader (ImportService): SourceAnimal.ResolvedByDecision flows through; the
report surfaces Animals.ConflictsResolvedByDecision + a German note.
Result on real data: the 2 current decisions (Firefly D-/PP, WildFire PP)
un-quarantine → Konflikte 21 → 19. As god appends entries the count grows;
nothing else needed from me.
Tests: python test_extract (decision clears conflict + genotype authoritative
+ removes from conflicts list + tolerates missing file) and a C# loader test
(a resolved animal loads and is counted). Folded into the EXTRACT-BANDS branch
so the next re-extract applies band-aware Farbschlag + these decisions in one
pass. No schema change (JSON DTO fields). python + dotnet 121/121 green;
has-pending clean.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
BUG (blocked the supervised live re-import): /import/execute threw
Npgsql 23503 FK_Litters_Gerbils_FatherId and rolled back. Root cause was
INSERT ORDERING — synthesized derived litters were SaveChanges()'d BEFORE
the parent gerbils (created later in the animal loop), so the litter's
Father/MotherId pointed at rows that didn't exist yet. The dry-run and the
EF in-memory test provider don't enforce FKs, so it slipped through.
Fix:
- Stage synthesized litters in the context but DON'T save them early; the
single SaveChanges after the animal loop lets EF order parents → litters →
offspring (all FKs nullable). Saving litters first was the fault.
- FK-integrity guard (god's spec): compute the persisted set (existing DB +
this run's loadable) and null out any litter parent FK not in it; SKIP a
derived litter whose BOTH parents are unresolvable (offspring loads with
LitterId=null). Quarantined parents already resolve to null via
ResolveParentGid; this is defense-in-depth + makes the invariant explicit.
- Report litterParentFksDropped + derivedLittersSkipped (LitterSummary) +
a German note — so a green dry-run (0/0) GUARANTEES execute won't FK-fault.
Tests: two SQLite-backed regressions (SQLite enforces FKs, unlike the
in-memory provider) — a derived litter with NEW chart parents executes
without throwing, and a quarantined parent leaves that FK null. 120 C#
tests + python green; no schema change (has-pending clean).
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Per hive/agents/god/OWNERSHIP-residency.md (Julian): "Clan kleine Chaoten"
is the wife's own Zucht. Classify each animal:
(a) RESIDENT if zuchtCanon contains 'kleinechaote' (separator/declension-
insensitive: "v.d. Kleinen Chaoten", "Clan-Kleine-Chaoten", …); OR
(b) PARENT EXCEPTION — a parent of a Clan offspring is resident even if its
own Zuchtname is foreign (you can only breed a Clan litter if the parents
were in your care). Runs AFTER the parentRefs→litter linking.
Otherwise EXTERNAL (pedigree ancestor, not living stock — kept, not deleted).
Stored as a dedicated Gerbil.IsResident bool (distinct from Status/Abgabe —
origin/identity, not current location), defaulting true (own stock unless
marked external; DB HasDefaultValue(true)). Additive migration
AddGerbilResidency; has-pending-model-changes clean. Round-trips in
GerbilDto/GerbilInput and is Gridify-filterable (isResident==true) so Kevin
can build a "nur Bestand" filter. ImportService computes it at (re-)import
and refreshes existing rows on the idempotent sweep. ResidencySummary added
to the import report.
Projected on real data: 306 loadable → 227 resident (188 rule a, +39 via
parent exception), 79 external ancestors.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Structural fix (god, Julian-reported via 'C'): the loader ignored
SourceAnimal.ParentRefs, so animals whose ancestry exists only as
Stammbaum chart-position refs loaded with LitterId=null ("unbekannt").
ImportService now synthesizes/reuses a derived litter from parentRefs:
resolves father+mother via name+DOB, groups siblings (same parents+dob)
into one litter, sets Father/Mother + offspring LitterId, dates it to the
offspring DOB, and tags Notes "aus Stammbaum-Diagramm abgeleitet
(Konfidenz: …)" so it's transparent/reversible. Existing animals that
become linkable are re-linked on re-run (sweep-idempotent). Dry-run counts
included. Projected: ~124 loadable animals gain a parent link.
Box-colour = sex (Julian): blue box = male, white box = female. All 11
pedigrees encode this as a solid theme-8 (accent5/blue) fill vs no fill.
xlsx_util.cell_fill_sex reads it; extract.py sets animal.gender from the
box; ImportService.InferGender prefers it over sire/dam name inference.
Result: 306/306 loadable animals now sexed (154♂/152♀).
Extractor noise fix (god): reject Farbschlag values that are actually a
parent NAME bled across cells (contain v.d./von/of/gen.) — cleared phantom
conflicts (e.g. Chayton). Combined with GEN-3 Uw→G: Konflikte 32→21.
Also skip Excel "~$" lock files in the glob.
GEN-3a contract (Kevin): ComposeGenotype appends "Slsl" for WP/Sls
carriers (wild-type sl/sl omitted) so 8-locus strings stay unchanged.
Importer-only. The live re-import into Julian's DB stays a separate
supervised gated step. 95 C# tests + python genotype tests green;
has-pending-model-changes clean (no schema change on this branch).
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
genotype.py:
- Uw/uw aliased to G/g (same locus) so the D2 conflict group + pure-Uw
cases stop being conflicts (Gg == Uwuw).
- Sls/WP recognized as a SECOND spotting locus (S(l)s(l)=WP het); carried
into mapped8locus alongside Sp (Sp+Sls = Superschecke).
- dea/Dea/taub/hörend -> hearing/deaf phenotype FLAG (not a locus).
- WFNZ/RV/GV/DP -> provenance/breeding tags (not genotype, not conflicts).
- test_genotype.py: zero-dep unit tests for all four.
extract.py: surface deaf+tags on animals; dedup conflict detection now
compares the NORMALIZED genotype key (mapped8locus) instead of the raw
string, so Uw=G no longer triggers a conflict. Result: Konflikte 32 -> 27,
Zucht-Splits stays 0. Dedup identity = name + DOB + Zucht.
Backend: Gerbil.IsDeaf (bool?) + additive migration AddGerbilDeafFlag
(has-pending-model-changes clean) + GerbilDto/GerbilInput round-trip.
ImportService sets IsDeaf from animal.deaf and preserves Sls + tags + deaf
in RawImportData (kept out of the 8-locus compact Genotype contract until
GEN-3a adopts them).
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
