Gulum
0c94cfcbf1
FIX-1 decision-matching: apply_conflict_decisions/apply_dob_remaps nutzen jetzt canon_pair(name)[0] als Match-Key (Dedup-Identitaet: call-name ohne Zucht, v.d.<->von den gefaltet). Workaround-Spelling v.d. in Victoria Welbys Decision bleibt erhalten; beide Formen matchen jetzt. Kommentar im decision-Eintrag aktualisiert. FIX-2 specific-wins: _alleles_compatible aendert '? vs x = False' -> '? vs x = True' (spezifischer Wert gewinnt). C- vs CC, G- vs Gg, P? vs PP sind kein Konflikt mehr. Echte Wert-Widersprueche (DD vs Dd, Ee vs ee, PP vs Pp) bleiben Konflikte. Loest Enya, Ella, Zac automatisch (Konflikte 8->5 erwartet). 2 bestehende Tests angepasst, 7 neue Tests. FIX-3 parent-FK backfill: nach dem Wurfchronik-Rueckverknuepfungs- Block iteriert ImportService.RunAsync ueber bereits importierte Wuerfe mit null Father/MotherId und setzt fehlende FKs wenn das Elterntier jetzt ladbar ist. Trockenlauf zaehlt, Execute schreibt. LitterSummary.ParentFksBackfilled + 2 neue C#-Tests (SQLite). FIX-4 Skarlett-Artefakt: parse_detail() strippt trailing / +YEAR aus dem Genotyp-Tail (re.sub). Sterbejahr bleibt als death-Date erhalten -> Skarlett erscheint als reiner Sterbedatum-Konflikt. 2 neue Python-Tests. Gate: 124/124 C#-Tests, Python test_extract/test_genotype ALL PASS, has-pending-model-changes = No. Co-Authored-By: Claude Sonnet 4.6 (1M context) <noreply@anthropic.com>
GerbilManager import tooling (FEAT-8b)
One-off migration tooling (Python, no third-party deps) that turns Julian's wife's hand-built spreadsheets into normalised JSON for review and, later, import. This is not product code — it lives outside the app and is run manually.
See the format analysis in FEAT-8a-format-spec.md (Pam's hive workspace).
What it does
extract.py runs stages 1–2 of the pipeline:
- Extract (stage 1)
- 10 Stammbaum pedigree charts → animals (name, DOB, death, Farbschlag, genotype, breeder, positionally-reconstructed parent links, photos).
- Wurfchronik litter chronicle → litters (date, dam, sire, Wurfstärke, sex breakdown, Zuchtnummer, notes). Columns are read by header row because the two sheets use different schemas.
- Embedded photos (
xl/media) →output/photos/<animal-slug>/, mapped to the animal by drawing anchor position.
- Dedup + review (stage 2)
- Merge animals on
normalise(call-name) + DOB, with the Zucht as discriminator (Julian's ruling: Wurfchronik[brackets]≡ Stammbaumof/von <line>suffix — both are the breeding line; same name+DOB but different Zucht stays two animals). - Match animals onto Wurfchronik litters (
litterRef) via DOB + (Vater, Mutter) — the Pam-validated build order (chronicle litters are canonical). - Emit a German-language
output/review-report.mdfor the breeder to verify (merges, conflicts, ambiguous/incomplete entries, unmapped genotype tokens, litter data-quality warnings). - Nothing is loaded into the database — stage 3 (API load) is separate and waits on DATA-2 + FEAT-1b phase 2.
- Merge animals on
Wurfchronik column semantics (Julian, authoritative)
A Wurfbezeichnung · B Geburtsdatum · C Mutter · D Vater ([…] = Zucht,
& = multiple sires) · E survivedToGoHome (Tabelle1 only, unlabeled —
detected positionally) · F Wurfstärke → totalBorn · G breakdown
Männchen,Weibchen,TG,s → males/females/stillborn/diedLater (s = died
after birth, before Abgabe) · last column → note. Validation: E should
equal F − TG − s; mismatches become German warnings in the review report
(data-quality signal, not an import blocker). A few Tabelle2 rows shift these
columns — they are read value-adaptively and flagged with a warning.
Genotypes are mapped to the frozen 8-locus contract (A C D E G P Sp Re) while
preserving everything: genotype.mapped8locus, genotype.rawGenotype (verbatim),
genotype.unmappedTokens (e.g. the Uw locus, markers WFNZ/WP/DP). A -
(unknown second allele) maps to ?.
Run
cd tools/import
python extract.py # uses the default source paths
python extract.py --stammbaeume "<dir>" --wurfchronik "<file.xlsx>"
Requires Python 3. Re-runnable / idempotent — re-run when more files arrive
(Wurfchronik Teil2+, or new charts).
Output (tools/import/output/, git-ignored except the report)
| File | Contents |
|---|---|
animals.json |
deduped animals with genotype, parentRefs, photos, sourceFiles |
litters.json |
litters from the Wurfchronik |
photos/<slug>/… |
extracted, anchor-mapped images |
review-report.md |
human review deliverable (committed) |
Files
xlsx_util.py— dependency-free.xlsxreader (zip + XML): shared strings, cells by reference, image/drawing anchors.genotype.py— genotype notation parser → 8-locus mapping + raw + unmapped.extract.py— the pipeline (stages 1–2).