Gulum
fd48f7fc09
BUG (blocked the supervised live re-import): /import/execute threw Npgsql 23503 FK_Litters_Gerbils_FatherId and rolled back. Root cause was INSERT ORDERING — synthesized derived litters were SaveChanges()'d BEFORE the parent gerbils (created later in the animal loop), so the litter's Father/MotherId pointed at rows that didn't exist yet. The dry-run and the EF in-memory test provider don't enforce FKs, so it slipped through. Fix: - Stage synthesized litters in the context but DON'T save them early; the single SaveChanges after the animal loop lets EF order parents → litters → offspring (all FKs nullable). Saving litters first was the fault. - FK-integrity guard (god's spec): compute the persisted set (existing DB + this run's loadable) and null out any litter parent FK not in it; SKIP a derived litter whose BOTH parents are unresolvable (offspring loads with LitterId=null). Quarantined parents already resolve to null via ResolveParentGid; this is defense-in-depth + makes the invariant explicit. - Report litterParentFksDropped + derivedLittersSkipped (LitterSummary) + a German note — so a green dry-run (0/0) GUARANTEES execute won't FK-fault. Tests: two SQLite-backed regressions (SQLite enforces FKs, unlike the in-memory provider) — a derived litter with NEW chart parents executes without throwing, and a quarantined parent leaves that FK null. 120 C# tests + python green; no schema change (has-pending clean). Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
515 lines
27 KiB
C#
515 lines
27 KiB
C#
using System.Text.Json;
|
||
using System.Text.RegularExpressions;
|
||
using GerbilManagerWebAPI.Models;
|
||
using Microsoft.EntityFrameworkCore;
|
||
|
||
namespace GerbilManagerWebAPI.Import
|
||
{
|
||
/// <summary>
|
||
/// FEAT-8c import loader. Consumes tools/import/output (animals.json + litters.json
|
||
/// produced by extract.py) and loads conflict-free data into the database:
|
||
/// litters first (Wurfchronik = authoritative), then animals matched onto them.
|
||
///
|
||
/// Load policy:
|
||
/// - Litters: all created (idempotent by ExternalRef = source litter id).
|
||
/// - Animals: created when they have a DOB and are NOT in conflict. The birth-litter
|
||
/// link is set only for HIGH-confidence matches (litterRef.confidence == "hoch");
|
||
/// date-only/ambiguous links are quarantined (animal loads with LitterId = null).
|
||
/// - QUARANTINED (never loaded): conflicts + stubs (no DOB) — await the wife's review.
|
||
/// Idempotent: re-running matches on ExternalRef and skips existing rows.
|
||
/// Execute is gated by the endpoint; this service only acts when asked.
|
||
/// </summary>
|
||
public sealed class ImportService
|
||
{
|
||
private static readonly string[] LocusOrder = { "A", "C", "D", "E", "G", "P", "Sp", "Re" };
|
||
private static readonly JsonSerializerOptions Json = new()
|
||
{
|
||
PropertyNameCaseInsensitive = true,
|
||
};
|
||
private const string ImportSourceTag = "FEAT-8 Stammbaum/Wurfchronik";
|
||
|
||
private readonly ApplicationContext _db;
|
||
private readonly string _sourceDir;
|
||
private readonly string _photoRoot;
|
||
|
||
/// <summary>Test-friendly constructor with explicit paths.</summary>
|
||
public ImportService(ApplicationContext db, string sourceDir, string photoRoot)
|
||
{
|
||
_db = db;
|
||
_sourceDir = sourceDir;
|
||
_photoRoot = photoRoot;
|
||
}
|
||
|
||
public ImportService(ApplicationContext db, IConfiguration config, IWebHostEnvironment env)
|
||
: this(db,
|
||
config["Import:SourcePath"]
|
||
?? Path.GetFullPath(Path.Combine(env.ContentRootPath, "..", "tools", "import", "output")),
|
||
config["Photos:RootPath"] ?? Path.Combine(env.ContentRootPath, "photo-storage"))
|
||
{
|
||
}
|
||
|
||
public async Task<ImportReport> RunAsync(bool execute)
|
||
{
|
||
var notes = new List<string>();
|
||
var samples = new List<string>();
|
||
|
||
var animals = Load<List<SourceAnimal>>("animals.json") ?? new();
|
||
var litters = Load<List<SourceLitter>>("litters.json") ?? new();
|
||
if (animals.Count == 0 && litters.Count == 0)
|
||
notes.Add($"Keine Quelldaten gefunden in {_sourceDir} (animals.json/litters.json). extract.py zuerst ausführen.");
|
||
|
||
// ---- categorise animals ----
|
||
var loadable = new List<SourceAnimal>();
|
||
int conflicts = 0, stubs = 0, dateOnly = 0, ambiguous = 0;
|
||
foreach (var a in animals)
|
||
{
|
||
if (a.Conflict) { conflicts++; continue; }
|
||
if (string.IsNullOrEmpty(a.Dob)) { stubs++; continue; }
|
||
loadable.Add(a);
|
||
var conf = a.LitterRef?.Confidence;
|
||
if (a.LitterRef?.Candidates is { Count: > 0 }) ambiguous++;
|
||
else if (conf == "niedrig") dateOnly++;
|
||
}
|
||
|
||
// existing rows (idempotency). Gerbils carry ExternalRef; Litters have no such
|
||
// column, so we key litter idempotency on the stable (Name + Date) pair instead.
|
||
var existingGerbilExtRefs = await _db.Gerbils
|
||
.Where(g => g.ExternalRef != null)
|
||
.Select(g => g.ExternalRef!).ToListAsync();
|
||
var existingGerbilSet = existingGerbilExtRefs.ToHashSet();
|
||
|
||
var existingLitterKeys = await _db.Litters
|
||
.Select(l => new { l.Name, l.Date }).ToListAsync();
|
||
var existingLitterKeySet = existingLitterKeys
|
||
.Select(x => $"{x.Name}|{x.Date:yyyy-MM-dd}").ToHashSet();
|
||
|
||
// colour-variety name -> id (case-insensitive)
|
||
var varieties = await _db.ColorVarieties.Select(v => new { v.Id, v.Name }).ToListAsync();
|
||
var varietyByName = varieties
|
||
.GroupBy(v => v.Name.Trim().ToLowerInvariant())
|
||
.ToDictionary(g => g.Key, g => g.First().Id);
|
||
|
||
// gender inference from litter roles (sire -> male, dam -> female; both -> unknown)
|
||
var sireNames = litters.Select(l => Normalize(StripZucht(l.SireName))).Where(s => s.Length > 0).ToHashSet();
|
||
var damNames = litters.Select(l => Normalize(StripZucht(l.DamName))).Where(s => s.Length > 0).ToHashSet();
|
||
|
||
// ---- litters: create map source.id -> Litter (for high-confidence animal links) ----
|
||
int littersCreated = 0, littersExisting = 0;
|
||
var litterIdMap = new Dictionary<string, Guid>(); // source litter id -> Litter.Id
|
||
foreach (var sl in litters)
|
||
{
|
||
var date = ParseDate(sl.Date);
|
||
var name = $"Wurf {sl.LitterId}".Trim();
|
||
var key = $"{name}|{date:yyyy-MM-dd}";
|
||
if (existingLitterKeySet.Contains(key)) { littersExisting++; continue; }
|
||
|
||
var id = Guid.NewGuid();
|
||
litterIdMap[sl.Id] = id;
|
||
littersCreated++;
|
||
if (execute && date is DateOnly d)
|
||
{
|
||
_db.Litters.Add(new Litter
|
||
{
|
||
Id = id,
|
||
Name = name,
|
||
Date = d,
|
||
TotalBorn = sl.TotalBorn,
|
||
Notes = string.IsNullOrWhiteSpace(sl.Note) ? null : sl.Note,
|
||
PairingCode = string.IsNullOrWhiteSpace(sl.Zuchtnummer) ? null : sl.Zuchtnummer,
|
||
});
|
||
}
|
||
if (samples.Count < 8 && date is not null)
|
||
samples.Add($"Wurf: {name} ({sl.Date}) — {sl.DamName} × {sl.SireName}");
|
||
}
|
||
if (execute) await _db.SaveChangesAsync();
|
||
|
||
// ---- animals ----
|
||
int animalsCreated = 0, linked = 0, fbMatched = 0, fbUnmatched = 0, animalsExisting = 0;
|
||
int photosAttached = 0, photosMissing = 0;
|
||
var createdAnimalByName = new Dictionary<string, Guid>(); // normalized name -> gerbil id (for litter back-link)
|
||
|
||
// name+DOB -> gid index, across EXISTING rows AND this run's planned animals, so that
|
||
// chart-position parentRefs (PEDIGREE-LINK) can resolve a parent to a real gerbil id.
|
||
var existingRows = await _db.Gerbils
|
||
.Select(g => new { g.Id, g.Name, g.DateOfBirth, g.ExternalRef, g.LitterId }).ToListAsync();
|
||
var gidByNameDob = new Dictionary<string, Guid>();
|
||
foreach (var g in existingRows)
|
||
gidByNameDob[NameDobKey(g.Name, g.DateOfBirth)] = g.Id;
|
||
var existingLitterByExtRef = existingRows.Where(g => g.ExternalRef != null)
|
||
.ToDictionary(g => g.ExternalRef!, g => g.LitterId);
|
||
|
||
// PASS 1: assign ids + resolve fb/gender/Wurfchronik link (no writes yet).
|
||
var plan = new List<AnimalPlan>();
|
||
foreach (var a in loadable)
|
||
{
|
||
bool exists = existingGerbilSet.Contains(a.Id);
|
||
var gid = exists ? gidByNameDob[NameDobKey(a.Name, ParseDate(a.Dob))] : Guid.NewGuid();
|
||
|
||
Guid? wurfLitterId = null;
|
||
if (a.LitterRef?.Confidence == "hoch" && a.LitterRef.Candidates is not { Count: > 0 }
|
||
&& litterIdMap.TryGetValue(a.LitterRef.LitterId, out var lid))
|
||
wurfLitterId = lid;
|
||
|
||
Guid? colorVarietyId = null;
|
||
var fbCandidates = new[] { a.Farbschlag }.Concat(a.FarbschlagVariants)
|
||
.Where(s => !string.IsNullOrWhiteSpace(s));
|
||
foreach (var fb in fbCandidates)
|
||
if (varietyByName.TryGetValue(fb.Trim().ToLowerInvariant(), out var vid))
|
||
{ colorVarietyId = vid; break; }
|
||
|
||
var gender = InferGender(a, sireNames, damNames);
|
||
var norm = Normalize(StripZucht(a.Name));
|
||
if (norm.Length > 0) createdAnimalByName.TryAdd(norm, gid);
|
||
if (!exists) gidByNameDob.TryAdd(NameDobKey(a.Name, ParseDate(a.Dob)), gid);
|
||
|
||
var currentLitter = exists && existingLitterByExtRef.TryGetValue(a.Id, out var el) ? el : null;
|
||
plan.Add(new AnimalPlan(a, gid, exists, wurfLitterId, currentLitter, colorVarietyId, gender));
|
||
}
|
||
|
||
// PASS 1.5: PEDIGREE-LINK — synthesize/reuse a litter from chart-position parentRefs for
|
||
// any animal that has no Wurfchronik litter and isn't already litter-linked. Siblings
|
||
// (same father+mother+dob) share one derived litter. Computed for dry-run counts too.
|
||
int parentLinksAdded = 0, derivedLitters = 0;
|
||
var synthLitterForGid = new Dictionary<Guid, Guid>(); // offspring gid -> synth litter id
|
||
var synthLitters = new Dictionary<string, SynthLitter>(); // parents+date key -> synth litter
|
||
foreach (var p in plan)
|
||
{
|
||
if (p.WurfLitterId is not null || p.CurrentLitterId is not null) continue;
|
||
if (p.A.ParentRefs is not { Count: > 0 }) continue;
|
||
var father = ResolveParentGid(p.A, "father", gidByNameDob);
|
||
var mother = ResolveParentGid(p.A, "mother", gidByNameDob);
|
||
if (father is null && mother is null) continue; // nothing resolvable to link
|
||
var dob = ParseDate(p.A.Dob);
|
||
var conf = p.A.ParentRefs.FirstOrDefault()?.Confidence ?? "medium";
|
||
var key = $"{father}|{mother}|{dob:yyyy-MM-dd}";
|
||
if (!synthLitters.TryGetValue(key, out var sl))
|
||
{
|
||
sl = new SynthLitter(Guid.NewGuid(), father, mother, dob, conf);
|
||
synthLitters[key] = sl;
|
||
derivedLitters++;
|
||
}
|
||
synthLitterForGid[p.Gid] = sl.Id;
|
||
parentLinksAdded++;
|
||
}
|
||
|
||
// FK-INTEGRITY (PEDIGREE-LINK bug fix): a litter's Father/MotherId must resolve to a
|
||
// gerbil that is created-or-existing, or Postgres throws FK_Litters_Gerbils_*. Compute
|
||
// the persisted set (existing DB rows + this run's loadable animals) and drop any parent
|
||
// FK that isn't in it; SKIP a derived litter whose BOTH parents are unresolvable (its
|
||
// offspring then load with LitterId=null — still better than 'unbekannt' won't regress).
|
||
// This runs in dry-run too, so a green dry-run GUARANTEES /import/execute won't FK-fault.
|
||
var persisted = new HashSet<Guid>(existingRows.Select(r => r.Id));
|
||
foreach (var p in plan) persisted.Add(p.Gid);
|
||
int litterParentFksDropped = 0, derivedLittersSkipped = 0;
|
||
foreach (var key in synthLitters.Keys.ToList())
|
||
{
|
||
var sl = synthLitters[key];
|
||
var f = sl.Father is Guid gf && persisted.Contains(gf) ? sl.Father : null;
|
||
var m = sl.Mother is Guid gm && persisted.Contains(gm) ? sl.Mother : null;
|
||
if (sl.Father is not null && f is null) litterParentFksDropped++;
|
||
if (sl.Mother is not null && m is null) litterParentFksDropped++;
|
||
if (f is null && m is null)
|
||
{
|
||
derivedLittersSkipped++; derivedLitters--;
|
||
foreach (var gid in synthLitterForGid.Where(kv => kv.Value == sl.Id).Select(kv => kv.Key).ToList())
|
||
synthLitterForGid.Remove(gid);
|
||
synthLitters.Remove(key);
|
||
continue;
|
||
}
|
||
synthLitters[key] = sl with { Father = f, Mother = m };
|
||
}
|
||
parentLinksAdded = synthLitterForGid.Count;
|
||
|
||
// litter id -> (father, mother) gids, across synthesized + Wurfchronik (by name) litters,
|
||
// each FK guarded by the persisted set. Used by residency rule (b) below; augmented with
|
||
// existing DB litters under execute.
|
||
var litterParents = new Dictionary<Guid, (Guid? F, Guid? M)>();
|
||
foreach (var sl in synthLitters.Values)
|
||
litterParents[sl.Id] = (sl.Father, sl.Mother);
|
||
foreach (var sl in litters)
|
||
if (litterIdMap.TryGetValue(sl.Id, out var lid))
|
||
{
|
||
Guid? f = createdAnimalByName.TryGetValue(Normalize(StripZucht(sl.SireName)), out var fid) && persisted.Contains(fid) ? fid : null;
|
||
Guid? m = createdAnimalByName.TryGetValue(Normalize(StripZucht(sl.DamName)), out var mid) && persisted.Contains(mid) ? mid : null;
|
||
litterParents[lid] = (f, m);
|
||
}
|
||
|
||
// PASS 2: stage synthesized litters (parents already guarded above). DO NOT save them
|
||
// before the animals — the offspring AND the parent gerbils are created in the loop
|
||
// below, so a single SaveChanges at the end lets EF order parents→litters→offspring
|
||
// (all FKs are nullable). Saving litters first is exactly what caused the FK fault.
|
||
if (execute)
|
||
{
|
||
// reuse an existing litter with the same parents+date instead of duplicating.
|
||
var existingLitterRows = await _db.Litters
|
||
.Select(l => new { l.Id, l.FatherId, l.MotherId, l.Date }).ToListAsync();
|
||
var litterByParentsDate = new Dictionary<string, Guid>();
|
||
foreach (var l in existingLitterRows)
|
||
{
|
||
litterByParentsDate[$"{l.FatherId}|{l.MotherId}|{l.Date:yyyy-MM-dd}"] = l.Id;
|
||
litterParents[l.Id] = (l.FatherId, l.MotherId);
|
||
}
|
||
|
||
foreach (var sl in synthLitters.Values.ToList())
|
||
{
|
||
var reuseKey = $"{sl.Father}|{sl.Mother}|{sl.Date:yyyy-MM-dd}";
|
||
if (litterByParentsDate.TryGetValue(reuseKey, out var existingId))
|
||
{
|
||
// remap offspring to the existing litter; don't create a duplicate.
|
||
foreach (var g in synthLitterForGid.Where(kv => kv.Value == sl.Id).Select(kv => kv.Key).ToList())
|
||
synthLitterForGid[g] = existingId;
|
||
derivedLitters--;
|
||
continue;
|
||
}
|
||
_db.Litters.Add(new Litter
|
||
{
|
||
Id = sl.Id,
|
||
Name = $"Wurf (aus Diagramm) {sl.Date:yyyy-MM-dd}".Trim(),
|
||
Date = sl.Date ?? default,
|
||
FatherId = sl.Father,
|
||
MotherId = sl.Mother,
|
||
Notes = $"aus Stammbaum-Diagramm abgeleitet (Konfidenz: {sl.Confidence})",
|
||
});
|
||
}
|
||
// NOTE: no SaveChanges here — staged with the gerbils below.
|
||
}
|
||
|
||
// OWNERSHIP/RESIDENCY (runs AFTER litter links exist): (a) Zuchtname matches the Clan
|
||
// kennel (zuchtCanon contains 'kleinechaote'); (b) parent of a Clan offspring, even if
|
||
// the parent's own Zuchtname is foreign. See hive/agents/god/OWNERSHIP-residency.md.
|
||
static bool ClanCanon(string? zc) =>
|
||
(zc ?? "").Contains("kleinechaote", StringComparison.OrdinalIgnoreCase);
|
||
var resident = new HashSet<Guid>();
|
||
foreach (var p in plan) if (ClanCanon(p.A.ZuchtCanon)) resident.Add(p.Gid); // (a)
|
||
int residentByA = resident.Count, flippedByParentRule = 0;
|
||
foreach (var p in plan)
|
||
{
|
||
if (!ClanCanon(p.A.ZuchtCanon)) continue;
|
||
var litId = p.WurfLitterId ?? (synthLitterForGid.TryGetValue(p.Gid, out var s) ? s : (Guid?)null);
|
||
if (litId is null || !litterParents.TryGetValue(litId.Value, out var par)) continue;
|
||
if (par.F is Guid gf && resident.Add(gf)) flippedByParentRule++; // (b)
|
||
if (par.M is Guid gm && resident.Add(gm)) flippedByParentRule++;
|
||
}
|
||
int residentTotal = plan.Count(p => resident.Contains(p.Gid));
|
||
int externalTotal = plan.Count - residentTotal;
|
||
|
||
foreach (var p in plan)
|
||
{
|
||
Guid? litterId = p.WurfLitterId
|
||
?? (synthLitterForGid.TryGetValue(p.Gid, out var slid) ? slid : (Guid?)null);
|
||
if (litterId is not null) linked++;
|
||
bool isResident = resident.Contains(p.Gid);
|
||
|
||
if (p.ColorVarietyId is null) fbUnmatched++; else fbMatched++;
|
||
|
||
if (samples.Count < 16)
|
||
samples.Add($"Tier: {p.A.Name} (*{p.A.Dob}), Genotyp {ComposeGenotype(p.A.Genotype)}"
|
||
+ (litterId is not null ? (p.WurfLitterId is not null ? ", Wurf-verknüpft" : ", Eltern aus Diagramm") : "")
|
||
+ (p.ColorVarietyId is not null ? $", Farbschlag „{p.A.Farbschlag}\"" : ""));
|
||
|
||
if (p.Exists)
|
||
{
|
||
animalsExisting++;
|
||
// sweep idempotency: re-link a now-linkable animal + refresh its residency.
|
||
if (execute)
|
||
{
|
||
var row = await _db.Gerbils.FirstOrDefaultAsync(g => g.Id == p.Gid);
|
||
if (row is not null)
|
||
{
|
||
if (p.CurrentLitterId is null && litterId is not null) row.LitterId = litterId;
|
||
row.IsResident = isResident;
|
||
}
|
||
}
|
||
continue;
|
||
}
|
||
animalsCreated++;
|
||
|
||
if (execute)
|
||
{
|
||
_db.Gerbils.Add(new Gerbil
|
||
{
|
||
Id = p.Gid,
|
||
Name = p.A.Name,
|
||
Gender = p.Gender,
|
||
Status = GerbilStatus.Active,
|
||
DateOfBirth = ParseDate(p.A.Dob),
|
||
DateOfDeath = ParseDate(p.A.Death),
|
||
LitterId = litterId,
|
||
ColorVarietyId = p.ColorVarietyId,
|
||
Genotype = ComposeGenotype(p.A.Genotype),
|
||
IsDeaf = p.A.Deaf,
|
||
IsResident = isResident,
|
||
ImportSource = ImportSourceTag,
|
||
ExternalRef = p.A.Id,
|
||
OriginBreeder = string.IsNullOrWhiteSpace(p.A.Zucht) ? null : p.A.Zucht.Trim(),
|
||
RawImportData = JsonSerializer.Serialize(new
|
||
{
|
||
p.A.Genotype.RawGenotype,
|
||
p.A.Genotype.UnmappedTokens,
|
||
// GEN-3b: Sls (2nd spotting locus) preserved here until Kevin's GEN-3a
|
||
// parser adopts it into the compact Genotype contract; tags + deaf too.
|
||
Sls = p.A.Genotype.Mapped8locus.TryGetValue("Sls", out var sls) ? sls : null,
|
||
p.A.Tags,
|
||
p.A.Deaf,
|
||
p.A.Zucht,
|
||
p.A.SourceFiles,
|
||
FarbschlagRaw = p.A.Farbschlag,
|
||
}),
|
||
});
|
||
}
|
||
|
||
// photos
|
||
foreach (var rel in p.A.Photos)
|
||
{
|
||
var src = Path.Combine(_sourceDir, rel.Replace('/', Path.DirectorySeparatorChar));
|
||
if (!File.Exists(src)) { photosMissing++; continue; }
|
||
photosAttached++;
|
||
if (execute)
|
||
{
|
||
Directory.CreateDirectory(_photoRoot);
|
||
var fileName = $"{Guid.NewGuid():N}{Path.GetExtension(src)}";
|
||
File.Copy(src, Path.Combine(_photoRoot, fileName), overwrite: true);
|
||
_db.GerbilPhotos.Add(new GerbilPhoto
|
||
{
|
||
Id = Guid.NewGuid(),
|
||
GerbilId = p.Gid,
|
||
FileName = fileName,
|
||
SortOrder = 0,
|
||
CreatedAt = DateTimeOffset.UtcNow,
|
||
});
|
||
}
|
||
}
|
||
}
|
||
if (execute) await _db.SaveChangesAsync();
|
||
|
||
// ---- back-link Wurfchronik litter parents by name (best effort) ----
|
||
if (execute)
|
||
{
|
||
foreach (var sl in litters)
|
||
{
|
||
if (!litterIdMap.TryGetValue(sl.Id, out var lid)) continue;
|
||
var litter = await _db.Litters.FirstOrDefaultAsync(l => l.Id == lid);
|
||
if (litter is null) continue;
|
||
// guard: only link parents that are actually persisted (avoid an orphan FK).
|
||
if (createdAnimalByName.TryGetValue(Normalize(StripZucht(sl.SireName)), out var fId) && persisted.Contains(fId))
|
||
litter.FatherId = fId;
|
||
if (createdAnimalByName.TryGetValue(Normalize(StripZucht(sl.DamName)), out var mId) && persisted.Contains(mId))
|
||
litter.MotherId = mId;
|
||
}
|
||
await _db.SaveChangesAsync();
|
||
}
|
||
|
||
notes.Add("Quarantäne (kein Import): Konflikte + Stubs ohne Geburtsdatum + unsichere Wurf-Zuordnungen — warten auf die Prüfung durch die Züchterin.");
|
||
if (parentLinksAdded > 0)
|
||
notes.Add($"Stammbaum-Diagramm: {parentLinksAdded} Tiere über Eltern-Verknüpfung einem (abgeleiteten) Wurf zugeordnet ({derivedLitters} abgeleitete Würfe).");
|
||
notes.Add($"FK-Integrität: {litterParentFksDropped} Eltern-Verknüpfung(en) verworfen (Elternteil nicht ladbar), {derivedLittersSkipped} abgeleitete Würfe übersprungen (kein ladbares Elternteil). Bei 0/0 ist /import/execute FK-sicher.");
|
||
notes.Add($"Bestand/Herkunft: {residentTotal} im Bestand (Clan Kleine Chaoten), {externalTotal} externe Ahnen ({flippedByParentRule} davon über die Eltern-Regel als Bestand erkannt).");
|
||
if (!execute) notes.Add("DRY-RUN: nichts gespeichert. /import/execute lädt die konfliktfreien Daten.");
|
||
|
||
return new ImportReport(
|
||
Executed: execute,
|
||
Litters: new LitterSummary(litters.Count, littersCreated, littersExisting, derivedLitters, derivedLittersSkipped, litterParentFksDropped),
|
||
Animals: new AnimalSummary(
|
||
animals.Count, animalsCreated, linked, fbMatched, fbUnmatched, animalsExisting,
|
||
new QuarantineSummary(conflicts, stubs, dateOnly, ambiguous, conflicts + stubs),
|
||
parentLinksAdded),
|
||
Photos: new PhotoSummary(photosAttached, photosMissing),
|
||
Samples: samples,
|
||
Notes: notes,
|
||
Residency: new ResidencySummary(residentTotal, externalTotal, flippedByParentRule));
|
||
}
|
||
|
||
private T? Load<T>(string file)
|
||
{
|
||
var path = Path.Combine(_sourceDir, file);
|
||
if (!File.Exists(path)) return default;
|
||
using var fs = File.OpenRead(path);
|
||
return JsonSerializer.Deserialize<T>(fs, Json);
|
||
}
|
||
|
||
public static string ComposeGenotype(SourceGenotype g)
|
||
{
|
||
var tokens = LocusOrder.Select(locus =>
|
||
{
|
||
if (g.Mapped8locus.TryGetValue(locus, out var pair) && pair.Count == 2)
|
||
return StripCaret(pair[0]) + StripCaret(pair[1]);
|
||
return "??";
|
||
}).ToList();
|
||
|
||
// GEN-3a contract (Kevin): Sls is appended LAST and ONLY for carriers — the
|
||
// wild-type sl/sl is omitted so existing 8-locus strings stay unchanged. WP het
|
||
// renders as the trailing token "Slsl"; S(l)S(l) is lethal so never appears.
|
||
if (g.Mapped8locus.TryGetValue("Sls", out var sls) && sls.Count == 2
|
||
&& !(sls[0] == "sl" && sls[1] == "sl"))
|
||
{
|
||
tokens.Add(StripCaret(sls[0]) + StripCaret(sls[1]));
|
||
}
|
||
return string.Join(' ', tokens);
|
||
}
|
||
|
||
private static string StripCaret(string allele) => allele.Replace("^", "");
|
||
|
||
private static Gender InferGender(SourceAnimal a, HashSet<string> sires, HashSet<string> dams)
|
||
{
|
||
// Box colour (blue=male, white=female) is the authoritative breeder signal — prefer it
|
||
// over sire/dam name inference (PEDIGREE-LINK, Julian 2026-06-06).
|
||
if (string.Equals(a.Gender, "male", StringComparison.OrdinalIgnoreCase)) return Gender.male;
|
||
if (string.Equals(a.Gender, "female", StringComparison.OrdinalIgnoreCase)) return Gender.female;
|
||
|
||
var n = Normalize(StripZucht(a.Name));
|
||
bool isSire = sires.Contains(n), isDam = dams.Contains(n);
|
||
if (isSire && !isDam) return Gender.male;
|
||
if (isDam && !isSire) return Gender.female;
|
||
return Gender.unknown;
|
||
}
|
||
|
||
public static DateOnly? ParseDate(string s)
|
||
{
|
||
if (string.IsNullOrWhiteSpace(s)) return null;
|
||
var m = Regex.Match(s, @"(\d{1,2})\.(\d{1,2})\.(\d{2,4})");
|
||
if (!m.Success) return null;
|
||
int d = int.Parse(m.Groups[1].Value), mo = int.Parse(m.Groups[2].Value);
|
||
int y = int.Parse(m.Groups[3].Value);
|
||
if (y < 100) y += 2000;
|
||
try { return new DateOnly(y, mo, d); }
|
||
catch { return null; }
|
||
}
|
||
|
||
private static string StripZucht(string name)
|
||
{
|
||
var n = Regex.Replace(name ?? "", @"\[.*?\]", " ");
|
||
n = Regex.Replace(n, @"\s+(?:of|von\s+den|von\s+der|v\.\s?d\.|von)\s+.*$", "", RegexOptions.IgnoreCase);
|
||
return n.Trim();
|
||
}
|
||
|
||
private static string Normalize(string name)
|
||
{
|
||
var n = (name ?? "").ToLowerInvariant();
|
||
n = Regex.Replace(n, @"\bgen\.\b", " ");
|
||
n = Regex.Replace(n, @"[^a-z0-9äöüß]", "");
|
||
return n;
|
||
}
|
||
|
||
/// <summary>Dedup identity for parent resolution: normalized call-name + DOB.</summary>
|
||
private static string NameDobKey(string name, DateOnly? dob) =>
|
||
$"{Normalize(StripZucht(name))}|{dob:yyyy-MM-dd}";
|
||
|
||
/// <summary>Resolve a chart-position parentRef (by role) to a known gerbil id, or null.</summary>
|
||
private static Guid? ResolveParentGid(SourceAnimal a, string role, Dictionary<string, Guid> gidByNameDob)
|
||
{
|
||
var pr = a.ParentRefs.FirstOrDefault(p =>
|
||
string.Equals(p.RoleGuess, role, StringComparison.OrdinalIgnoreCase));
|
||
if (pr is null || string.IsNullOrWhiteSpace(pr.Name)) return null;
|
||
return gidByNameDob.TryGetValue(NameDobKey(pr.Name, ParseDate(pr.Dob)), out var id) ? id : null;
|
||
}
|
||
|
||
/// <summary>Per-animal plan computed before any write so synthesis can run in dry-run too.</summary>
|
||
private sealed record AnimalPlan(
|
||
SourceAnimal A, Guid Gid, bool Exists, Guid? WurfLitterId,
|
||
Guid? CurrentLitterId, Guid? ColorVarietyId, Gender Gender);
|
||
|
||
/// <summary>A litter synthesized from chart-position parentRefs (PEDIGREE-LINK).</summary>
|
||
private sealed record SynthLitter(Guid Id, Guid? Father, Guid? Mother, DateOnly? Date, string Confidence);
|
||
}
|
||
}
|