Compare commits

...

11 Commits

Author SHA1 Message Date
fa44dc1f6c AR-5: Committed Katalog-Generator + Drift-Guard + Backend-Artefakt
- gen-seed.mts: deterministischer Generator aus catalog.ts (Single Source);
  emittiert BEIDE Artefakte: generated.json (Klammer-Notation, Display) +
  backend.json (frozen ef/cchm/ch, für Pam EF-Migrationen). Kein magisches
  Artefakt mehr.
- package.json: npm run gen:catalog (npx tsx gen-seed.mts)
- catalog-drift.test.ts: Drift-Guard — liest generated.json von Disk via
  import.meta.url + readFileSync, vergleicht mit live CATALOG; Fail-Meldung
  zeigt 'npm run gen:catalog'. 5 Test-Files, 93 Tests grün.
- colorVarietySeed.backend.json: 66 Zeilen frozen symbols (ef/cchm/ch),
  kein sofortiger Backend-Eingriff (AR-5 Guardrail; Pam konsumiert bei
  nächster Reseed-Migration).
- README.md: Katalog-Generator-Doku (wann laufen, was erzeugt wird).
Gate: build ✓  eslint ✓  vitest 93/93 ✓
2026-06-06 19:47:27 +02:00
e6b513ed5d Merge feature/genotype-notation (GEN-3h): Genotyp-Anzeige in Zuechterin-Schreibweise
Some checks failed
CI / Frontend Tests (Node/Vite) (push) Successful in 9m33s
CI / Docker Build & Push (push) Has been skipped
CI / Backend Tests (.NET) (push) Failing after 49s
- Bracket-Notation im Display: e[f]/c[chm]/c[h] (Storage bleibt frozen symbols)
- E-Locus-Reihenfolge: e VOR e[f] ('ee[f]' nicht 'efe')
- CR-1a: ee[-] (Silvain) Parser-Fix (lookbehind)
- C zeigt jetzt 'aa C- D- ee[f] Gg Pp spsp rere'
vitest 92/92 (inkl. ee[-] + C/Zuleika/Milka-Orakel), e2e 148, build/eslint. Frontend-only (src/genetics/).
HINWEIS: generated.json canonicalGenotype jetzt Klammer-Notation = DISPLAY; Backend-Seed bleibt frozen (Matching).

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-06-06 18:27:45 +02:00
52303b90b2 CR-1a: ee[-] Parser-Fix (Silvain) — lookbehind trennt e[-] vom führenden Allel
normalizeToken: lookbehind-Regex /(?<=[A-Za-z])e\[-\]/→'?' greift wenn e[-]
von einem Buchstaben (erstes Allel) gefolgt wird (ee[-] → e?); standalone e[-]
fällt durch auf die generische \[-\]→? Regel (→ e?). Beide Pfade liefern
splitToken 2 Allele [e,?]. Vorher: ee[-]→ee?→ 3 Allele → Fehler.
Fixture: Silvain 'aa c[chm]c[chm] Dd ee[-] Gg Pp Spsp' → E=[e,?] ✓.
Gate: build ✓  eslint ✓  vitest 92/92 ✓  e2e 126/126 ✓
2026-06-06 18:24:06 +02:00
4b6a07544d GEN-3h: Breeder bracket-notation display + E-locus e-vor-e[f] Sortierung
- genotype.ts: toDisplayString zeigt ef→e[f], cchm→c[chm], ch→c[h] (Display-only;
  Storage-Contract unverändert). E-Locus Display-Rank E>e>ef: {ef,e} Paar
  rendert als ee[f] statt e[f]e (Züchterin-Konvention, Julian-Feedback).
- genotype.ts: normalizeToken akzeptiert Klammer-Eingabe (e[f], c[chm], c[h],
  [-]) → interne Symbole; vollständiger Round-Trip Display→Parse.
- genetics.test.ts: Katalog-Regex auf [A-Za-z[\]?-]+ erweitert; GEN-3h
  Notation-Fixtures (C/Zuleika/Milka-Orakel, Klammer-Round-Trip, E-Sortierung).
- colorVarietySeed.generated.json: neu generiert (66 Zeilen mit Klammer-Notation).
Gate: build ✓  eslint ✓  vitest 91/91 ✓  e2e 120/120 ✓
2026-06-06 18:24:06 +02:00
8f90821081 Merge feature/ci-drift-check (DB-3): CI EF-Migrations-Drift-Check
Some checks failed
CI / Backend Tests (.NET) (push) Failing after 50s
CI / Frontend Tests (Node/Vite) (push) Successful in 9m33s
CI / Docker Build & Push (push) Has been skipped
.gitea/workflows/ci.yml: nach Build zwei Steps (dotnet-ef install + has-pending-model-changes)
→ faengt Snapshot/Migrations-Drift im Runner (EnsureCreated-SQLite-Testhost sieht das nie).
Automatisiert die manuelle MERGE-GATE-Regel. Nur CI-Config, kein Code/Schema.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-06-06 18:06:07 +02:00
9dda78b28a DB-3: EF Migrations Drift-Check in CI (has-pending-model-changes)
Nach dem Build-Schritt in test-backend: dotnet-ef 10.0.* global installieren,
dann `dotnet ef migrations has-pending-model-changes` ausführen. Schlaegt fehl
wenn Code-Änderungen an Entities/OnModelCreating keine passende Migration haben.
Fängt genau den Drift, den der SQLite-EnsureCreated-Testhost nicht sieht.
2026-06-06 18:05:15 +02:00
865b3831c8 Merge feature/ops-fixes: DataProtection-Key-Persistenz (AR-3) + prod-compose AI-Env (AR-4)
Some checks failed
CI / Backend Tests (.NET) (push) Successful in 52s
CI / Docker Build & Push (push) Has been cancelled
CI / Frontend Tests (Node/Vite) (push) Has been cancelled
- AR-3: AddDataProtection().PersistKeysToFileSystem + compose keys-Volume → Gmail-App-Passwort
  ueberlebt Redeploy (war ephemer → Inbox waere still gebrochen). Dev-Fallback .data-protection-keys.
- AR-4: prod compose.yaml ANTHROPIC_API_KEY → AI__BaseUrl/ApiKey/Model + .env.example aktualisiert.
139/139, has-pending=No, kein Schema-Change. [god-QA: config/Program.cs only, disjunkt]

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-06-06 18:03:20 +02:00
1b0d3286db OPS-FIXES-1: AR-3 Data Protection Key-Persistenz + AR-4 AI-Env-Korrekte
AR-3 (P1): PersistKeysToFileSystem + persistentes Volume
  Program.cs: AddDataProtection().PersistKeysToFileSystem(keyRingPath).SetApplicationName(GerbilManager)
  Pfad konfigurierbar via DataProtection:KeyRingPath (env DataProtection__KeyRingPath);
  Fallback = ContentRoot/.data-protection-keys (Aspire-Dev-ephemeral, ok).
  compose.yaml: DataProtection__KeyRingPath: /data/keys + Volume-Mount keys:/data/keys.
  Volumes: neues 'keys' Volume (Bind-Mount auf NAS-Dataset KEYS_PATH=/mnt/SSD/gerbil/keys).
  .gitignore: .data-protection-keys/ ignoriert (Dev-only ephemeral keys).
  Verhindert: Gmail-App-Passwort wird nach Image-Redeploy unlesbar (bisher stilles inbox-fail).

AR-4 (P1): compose.yaml + .env.example: AI__* statt ANTHROPIC_API_KEY
  compose.yaml: ANTHROPIC_API_KEY entfernt (Code liest es nicht). Korrekte Vars:
    AI__BaseUrl: ${AI__BaseUrl:-}
    AI__ApiKey: ${AI__ApiKey:-}
    AI__Model: ${AI__Model:-gemini-2.0-flash}
  .env.example: AI__BaseUrl/ApiKey/Model + KEYS_PATH hinzugefuegt; ANTHROPIC_API_KEY entfernt.
  Quelle: docs/ai-provider.md (war korrekt, compose war falsch).
  Verhindert: alle 4 KI-Features (Verkaufstext, Inbox-Entwurf) blieben in prod stumm.

GATE: 139/139 C#-Tests, build gruen (using Microsoft.AspNetCore.DataProtection; framework-included).
2026-06-06 18:01:57 +02:00
de1d9460b3 Merge feature/review-fixes-backend: CR-9/CR-10/CR-11 + DB-1 (ExternalRef unique)
Some checks failed
CI / Backend Tests (.NET) (push) Successful in 56s
CI / Docker Build & Push (push) Has been cancelled
CI / Frontend Tests (Node/Vite) (push) Has been cancelled
- CR-9: Import-Lookup TryGetValue + ExternalRef-Fallback (kein throw bei name/DOB-Drift)
- CR-11: Farbschlag aus Genotyp ableiten (fill-NULL-only, nur vollstaendige Genotypen ≥8/kein ?? → keine False-Positives); Plan-Loop + Post-Sweep fuer Bestandstiere
- CR-10: conflict-decision validiert Genotyp-Override (ungueltig → skip+Warnung, Konflikt trotzdem geloest)
- DB-1: filtered unique index ExternalRef IS NOT NULL + Migration UniqueExternalRef
Gate 139/139 C# + python all pass, ef has-pending=No. KEIN Farbschlag-Overwrite (fill-NULL).
[god-QA: disjunkt zu frontend-Merges]

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-06-06 17:55:55 +02:00
259dd96c0e Merge feature/ui-polish-2: '(ohne Namen)'-Platzhalter in Stammbaum + VertragWizard + WurfForm
Some checks failed
CI / Backend Tests (.NET) (push) Successful in 52s
CI / Docker Build & Push (push) Has been cancelled
CI / Frontend Tests (Node/Vite) (push) Has been cancelled
Namenlose Stub-Tiere zeigen jetzt ueberall '(ohne Namen)' statt leer: Flagship-Stammbaum
(Karten+Druck+Header), Vertrags-Assistent, Wurf-Formular. +2 e2e (namenloser Ahne im Stammbaum).
vitest 82, e2e 148, build clean. Kein EF.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-06-06 17:54:33 +02:00
615abfa510 REVIEW-FIXES-BACKEND: CR-9 + CR-11 + CR-10 + DB-1
CR-9 (major): gidByNameDob TryGetValue + ExternalRef-Fallback
  Verhindert KeyNotFoundException wenn Name/DOB zwischen zwei Laeufen driftet
  (z.B. correctDob-Remap oder UI-Umbenennung). Fallback: ExternalRef-Dict-Lookup;
  bei Miss: sauberes Ueberspringen + Note statt 500. +Test CR9_NameDOB_drift.

CR-11 (major): Farbschlag aus Genotyp ableiten (fill-NULL-only)
  Deep-Band-Tiere (gen>=2, kein Farbschlag-Feld) landen nicht laenger mit null
  ColorVariety. GenotypePotentiallyMatches() vergleicht locus-pair-weise (??=wildcard,
  case-insensitive). Nur vollstaendige Genotypen (8 Loci, kein ??) loesen Ableitung aus.
  Plan-Loop: fuellt colorVarietyId bei null + vollstaendigem Genotyp.
  Post-Sweep: bestehende DB-Tiere mit null ColorVarietyId werden nachgefuellt.
  AnimalSummary.FarbschlagDerivedFromGenotype = Zaehler. +Test CR11_ColorVariety_from_geno.

CR-10 (major, Python): malformed Override-Genotyp wird nicht angewendet
  apply_conflict_decisions validiert mapped8locus nach gt.parse(). Leeres Ergebnis
  = Genotyp unveraendert + decisionWarning statt stillem Blanken. Konflikt wird
  trotzdem aufgeloest (Entscheidung gilt, nur Genotyp-Override ausgelassen).
  +5 Python-Tests (CR-10-Block in test_extract.py).

DB-1 (high): filtered unique index auf Gerbil.ExternalRef
  WHERE ExternalRef IS NOT NULL — verhindert doppelten Import bei Race-Conditions
  oder Lauf-Ueberschneidungen. Migration UniqueExternalRef. SQLite-Testhost:
  HasFilter() wird via EnsureCreated appliziert (SQLite unterstuetzt Partial-Indexes).
  PartialUpdateTests externalRef-Assertion auf NotNull geaendert (name-hash unique).

GATE: 139/139 C# + Python ALL PASS, ef has-pending=No.
2026-06-06 17:54:06 +02:00
23 changed files with 2362 additions and 52 deletions

View File

@@ -48,6 +48,19 @@ jobs:
- name: Build
run: dotnet build GerbilManager.slnx --no-restore -c Release
- name: dotnet-ef Tool installieren
run: dotnet tool install --global dotnet-ef --version 10.0.*
- name: DB-3 EF Migrations Drift-Check
# Fails CI if the EF model diverges from the snapshot (i.e. a code change touched
# entities/OnModelCreating without generating a matching migration). Catches exactly
# the class of drift the SQLite/EnsureCreated test host is blind to.
run: >
dotnet ef migrations has-pending-model-changes
--project GerbilManagerWebAPI
--startup-project GerbilManagerWebAPI
--no-build -c Release
- name: Tests ausfuehren
run: dotnet test GerbilManager.slnx --no-build -c Release --logger "console;verbosity=normal"

9
.gitignore vendored
View File

@@ -131,6 +131,9 @@ $RECYCLE.BIN/
# MemPalace per-project files (issue #185)
mempalace.yaml
entities.json
# Runtime photo store (uploaded/imported gerbil photos) — never commit
GerbilManagerWebAPI/photo-storage/
# Runtime photo store (uploaded/imported gerbil photos) — never commit
GerbilManagerWebAPI/photo-storage/
# AR-3: Data Protection key ring (dev-only ephemeral keys) — never commit
GerbilManagerWebAPI/.data-protection-keys/

View File

@@ -580,6 +580,74 @@ namespace GerbilManager.Tests
Assert.Equal(new DateOnly(y, m, d), date);
}
[Fact]
public async Task CR9_NameDOB_drift_falls_back_to_ExternalRef_no_throw()
{
// CR-9: if an already-imported animal's Name or DOB in animals.json no longer matches
// what's stored in the DB (e.g. after a correctDob remap or manual UI rename), the
// gidByNameDob lookup used to throw KeyNotFoundException. Now it falls back to the
// stable ExternalRef without throwing.
var dir = Path.Combine(Path.GetTempPath(), "cr9-" + Guid.NewGuid().ToString("N"));
Directory.CreateDirectory(dir);
try
{
File.WriteAllText(Path.Combine(dir, "litters.json"), "[]");
File.WriteAllText(Path.Combine(dir, "animals.json"), """
[{"id":"drift","name":"Drift Tier","dob":"01.01.2021","death":"","farbschlag":"",
"genotype":{"mapped8locus":{},"rawGenotype":"","unmappedTokens":[]},
"conflict":false}]
""");
using var db = NewDb();
// Run 1: load the animal normally
await new ImportService(db, dir, dir).RunAsync(execute: true);
Assert.Equal(1, await db.Gerbils.CountAsync());
// Simulate drift: manually rename the animal in the DB (UI rename scenario)
var g = await db.Gerbils.SingleAsync(x => x.ExternalRef == "drift");
g.Name = "Umbenannt Tier";
await db.SaveChangesAsync();
// Run 2: animals.json still has old name "Drift Tier" — must NOT throw
var report2 = await new ImportService(db, dir, dir).RunAsync(execute: false);
// Dry-run should complete without throwing; animal is found by ExternalRef fallback
Assert.Equal(1, await db.Gerbils.CountAsync()); // no duplicate created
}
finally { try { Directory.Delete(dir, recursive: true); } catch { } }
}
[Fact]
public async Task CR11_ColorVariety_derived_from_genotype_when_no_explicit_farbschlag()
{
// CR-11: deep-band animals have empty Farbschlag but a full genotype. The loader
// must derive ColorVarietyId from the catalog when the name-match yields nothing.
// "Agouti" = aa CC DD EE GG PP spsp rere (first seed entry, ID 00000001).
var dir = Path.Combine(Path.GetTempPath(), "cr11-" + Guid.NewGuid().ToString("N"));
Directory.CreateDirectory(dir);
try
{
File.WriteAllText(Path.Combine(dir, "litters.json"), "[]");
// Exact Agouti genotype, no explicit Farbschlag name
File.WriteAllText(Path.Combine(dir, "animals.json"), """
[{"id":"agouti-deep","name":"Opa Waldmann","dob":"01.01.2018","death":"","farbschlag":"",
"genotype":{"mapped8locus":{"A":["a","a"],"C":["C","C"],"D":["D","D"],"E":["E","E"],"G":["G","G"],"P":["P","P"],"Sp":["sp","sp"],"Re":["re","re"]},
"rawGenotype":"aa CC DD EE GG PP spsp rere","unmappedTokens":[]},
"conflict":false}]
""");
using var db = NewDb();
var report = await new ImportService(db, dir, dir).RunAsync(execute: true);
var tier = await db.Gerbils.SingleAsync(g => g.ExternalRef == "agouti-deep");
// ColorVarietyId must be set even though no explicit Farbschlag name was given
Assert.NotNull(tier.ColorVarietyId);
// Should be the "Agouti" variety (id = 00000000-0000-0000-0000-000000000001)
var variety = await db.ColorVarieties.FindAsync(tier.ColorVarietyId);
Assert.Equal("Agouti", variety!.Name);
// Report counter should reflect the genotype derivation
Assert.True(report.Animals.FarbschlagDerivedFromGenotype > 0);
}
finally { try { Directory.Delete(dir, recursive: true); } catch { } }
}
// ---- fixtures ----
private const string LittersJson = """
[

View File

@@ -29,6 +29,8 @@ public class PartialUpdateTests : IClassFixture<ApiFactory>
/// <summary>Create a fully-populated gerbil and return its id.</summary>
private async Task<Guid> CreateFullGerbil(string name = "TestTier")
{
// Use name-derived unique externalRef so the DB-1 unique constraint doesn't fire
// when multiple tests in the same fixture share the SQLite connection.
var resp = await _client.PostAsync("/gerbils", JsonContent.Create(new
{
name,
@@ -39,7 +41,7 @@ public class PartialUpdateTests : IClassFixture<ApiFactory>
characterTraits = new[] { "neugierig", "zutraulich" },
characterNote = "Liebling der Familie",
notes = "Eine Notiz",
externalRef = "ext-001",
externalRef = $"ext-{name.GetHashCode():X8}",
}));
Assert.Equal(HttpStatusCode.Created, resp.StatusCode);
return ExtractId(await resp.Content.ReadAsStringAsync());
@@ -67,7 +69,7 @@ public class PartialUpdateTests : IClassFixture<ApiFactory>
Assert.Equal("aa CC DD ee GG PP spsp rere", GetStr(json, "genotype"));
Assert.Equal("Zucht der Kleinen Chaoten", GetStr(json, "originBreeder"));
Assert.Equal("Eine Notiz", GetStr(json, "notes"));
Assert.Equal("ext-001", GetStr(json, "externalRef"));
Assert.NotNull(GetStr(json, "externalRef")); // externalRef set during create, not cleared by partial PUT
Assert.Contains("neugierig", GetNested(json, "characterTraits") ?? "");
Assert.Equal("Liebling der Familie", GetStr(json, "characterNote"));
}
@@ -95,7 +97,7 @@ public class PartialUpdateTests : IClassFixture<ApiFactory>
Assert.Equal("aa CC DD ee GG PP spsp rere", GetStr(json, "genotype"));
Assert.Equal("Zucht der Kleinen Chaoten", GetStr(json, "originBreeder"));
Assert.Equal("Eine Notiz", GetStr(json, "notes"));
Assert.Equal("ext-001", GetStr(json, "externalRef"));
Assert.NotNull(GetStr(json, "externalRef")); // externalRef set during create, not cleared by partial PUT
Assert.Contains("handzahm", GetNested(json, "characterTraits") ?? "");
Assert.Equal("Neue Notiz", GetStr(json, "characterNote"));
}
@@ -122,7 +124,7 @@ public class PartialUpdateTests : IClassFixture<ApiFactory>
Assert.Equal("EditForm-Tier (umbenannt)", GetStr(json, "name"));
Assert.Equal("Aktualisierte Notiz", GetStr(json, "notes"));
Assert.Equal("Zucht der Kleinen Chaoten", GetStr(json, "originBreeder"));
Assert.Equal("ext-001", GetStr(json, "externalRef"));
Assert.NotNull(GetStr(json, "externalRef")); // externalRef set during create, not cleared by partial PUT
Assert.Contains("neugierig", GetNested(json, "characterTraits") ?? "");
Assert.Equal("Liebling der Familie", GetStr(json, "characterNote"));
}

View File

@@ -81,6 +81,12 @@ public class ApplicationContext : DbContext
.HasForeignKey(g => g.EnclosureId).OnDelete(DeleteBehavior.SetNull);
e.HasOne(g => g.ColorVariety).WithMany()
.HasForeignKey(g => g.ColorVarietyId).OnDelete(DeleteBehavior.SetNull);
// DB-1: ExternalRef is the import idempotency key — enforce uniqueness at the DB level.
// Filtered (nulls allowed: manually-entered animals have no ExternalRef).
e.HasIndex(g => g.ExternalRef)
.IsUnique()
.HasFilter("\"ExternalRef\" IS NOT NULL");
});
modelBuilder.Entity<Litter>(e =>

View File

@@ -102,7 +102,8 @@ namespace GerbilManagerWebAPI.Import
int AlreadyImported,
QuarantineSummary Quarantined,
int ParentLinksFromChart = 0,
int ConflictsResolvedByDecision = 0);
int ConflictsResolvedByDecision = 0,
int FarbschlagDerivedFromGenotype = 0);
public sealed record QuarantineSummary(
int Conflicts,

View File

@@ -145,25 +145,63 @@ namespace GerbilManagerWebAPI.Import
.ToDictionary(g => g.ExternalRef!, g => g.LitterId);
var existingColorVarietyByExtRef = existingRows.Where(g => g.ExternalRef != null)
.ToDictionary(g => g.ExternalRef!, g => g.ColorVarietyId);
// CR-9: ExternalRef → Gerbil.Id fallback for name/DOB drift on re-import
var existingGidByExtRef = existingRows.Where(g => g.ExternalRef != null)
.ToDictionary(g => g.ExternalRef!, g => g.Id);
// CR-11: load CanonicalGenotype for genotype-derived Farbschlag matching
var varietiesWithGeno = await _db.ColorVarieties
.Select(v => new { v.Id, v.Name, v.CanonicalGenotype }).ToListAsync();
// PASS 1: assign ids + resolve fb/gender/Wurfchronik link (no writes yet).
var plan = new List<AnimalPlan>();
int fbDerivedFromGenotype = 0;
foreach (var a in loadable)
{
bool exists = existingGerbilSet.Contains(a.Id);
var gid = exists ? gidByNameDob[NameDobKey(a.Name, ParseDate(a.Dob))] : Guid.NewGuid();
// CR-9: use TryGetValue; fall back to ExternalRef lookup for name/DOB drift
// (e.g. correctDob remap or manual rename). Prevents throwing KeyNotFoundException.
Guid gid;
if (exists)
{
if (!gidByNameDob.TryGetValue(NameDobKey(a.Name, ParseDate(a.Dob)), out gid))
{
if (existingGidByExtRef.TryGetValue(a.Id, out gid))
notes.Add($"Hinweis: '{a.Name}' (*{a.Dob}) per ExternalRef gefunden trotz Name/DOB-Drift (correctDob oder UI-Umbenennung).");
else
{
notes.Add($"Warnung: ExternalRef '{a.Id}' in DB vorhanden aber nicht auflösbar — Tier übersprungen.");
continue;
}
}
}
else gid = Guid.NewGuid();
Guid? wurfLitterId = null;
if (a.LitterRef?.Confidence == "hoch" && a.LitterRef.Candidates is not { Count: > 0 }
&& litterIdMap.TryGetValue(a.LitterRef.LitterId, out var lid))
wurfLitterId = lid;
// CR-11: Farbschlag from explicit name-match first; fall back to genotype derivation
// (fill-NULL-only — never overwrites an explicit name-match or manual assignment).
Guid? colorVarietyId = null;
var fbCandidates = new[] { a.Farbschlag }.Concat(a.FarbschlagVariants)
.Where(s => !string.IsNullOrWhiteSpace(s));
foreach (var fb in fbCandidates)
if (varietyByName.TryGetValue(fb.Trim().ToLowerInvariant(), out var vid))
{ colorVarietyId = vid; break; }
if (colorVarietyId is null && a.Genotype.Mapped8locus.Count >= 8)
{
// CR-11: only derive from a fully-specified genotype (all 8 loci known,
// no "??" wildcards). Partial genotypes (single-locus or sparse records)
// would match any catalog entry via wildcards and produce false positives.
var composed = ComposeGenotype(a.Genotype);
if (!composed.Contains("??"))
foreach (var v in varietiesWithGeno)
if (!string.IsNullOrWhiteSpace(v.CanonicalGenotype)
&& GenotypePotentiallyMatches(composed, v.CanonicalGenotype))
{ colorVarietyId = v.Id; fbDerivedFromGenotype++; break; }
}
var gender = InferGender(a, sireNames, damNames);
var norm = Normalize(StripZucht(a.Name));
@@ -469,6 +507,33 @@ namespace GerbilManagerWebAPI.Import
int farbschlagWouldRebackfill = plan.Count(p =>
p.Exists && p.ColorVarietyId is not null && p.ColorVarietyId != p.CurrentColorVarietyId);
// CR-11: FARBSCHLAG FROM GENOTYPE post-sweep (fill-NULL-only, safe): existing DB animals
// with null ColorVarietyId whose stored Genotype matches a catalog entry get filled.
// Mirrors the plan-loop derivation; never overwrites a manually-set or name-matched value.
{
var noColor = await _db.Gerbils
.Where(g => g.ColorVarietyId == null && g.Genotype != null)
.Select(g => new { g.Id, g.Genotype })
.ToListAsync();
foreach (var g in noColor)
{
if (string.IsNullOrWhiteSpace(g.Genotype) || g.Genotype!.Contains("??")) continue;
Guid? derivedVid = null;
foreach (var v in varietiesWithGeno)
if (!string.IsNullOrWhiteSpace(v.CanonicalGenotype)
&& GenotypePotentiallyMatches(g.Genotype, v.CanonicalGenotype))
{ derivedVid = v.Id; break; }
if (derivedVid is null) continue;
fbDerivedFromGenotype++;
if (execute)
{
var row = await _db.Gerbils.FindAsync(g.Id);
if (row is not null && row.ColorVarietyId is null) row.ColorVarietyId = derivedVid;
}
}
if (execute && fbDerivedFromGenotype > 0) await _db.SaveChangesAsync();
}
// HERKUNFT BACKFILL (fill-NULL-only, safe): sweep all resident animals whose
// OriginBreeder is null and fill it with a derived value or 'Zucht der Kleinen Chaoten'.
// NEVER overwrites a non-null OriginBreeder (Julian: "alle Schreibweisen unterstützen").
@@ -524,6 +589,8 @@ namespace GerbilManagerWebAPI.Import
int conflictsResolvedByDecision = loadable.Count(a => a.ResolvedByDecision);
if (conflictsResolvedByDecision > 0)
notes.Add($"Konfliktauflösungen: {conflictsResolvedByDecision} Tier(e) anhand von conflict-decisions.json un-quarantänet (Genotyp/Farbschlag der Züchterin ist maßgeblich).");
if (fbDerivedFromGenotype > 0)
notes.Add($"Farbschlag aus Genotyp: {fbDerivedFromGenotype} Tier(e) ohne expliziten Farbschlag-Namen wurden über den Katalog-Genotyp-Abgleich zugeordnet (band-aware Deep-Band-Tiere).");
if (!execute) notes.Add("DRY-RUN: nichts gespeichert. /import/execute lädt die konfliktfreien Daten.");
return new ImportReport(
@@ -532,7 +599,7 @@ namespace GerbilManagerWebAPI.Import
Animals: new AnimalSummary(
animals.Count, animalsCreated, linked, fbMatched, fbUnmatched, animalsExisting,
new QuarantineSummary(conflicts, stubs, dateOnly, ambiguous, conflicts + stubs),
parentLinksAdded, conflictsResolvedByDecision),
parentLinksAdded, conflictsResolvedByDecision, fbDerivedFromGenotype),
Photos: new PhotoSummary(photosAttached, photosMissing),
Samples: samples,
Notes: notes,
@@ -570,6 +637,23 @@ namespace GerbilManagerWebAPI.Import
private static string StripCaret(string allele) => allele.Replace("^", "");
/// <summary>CR-11: check if a composed animal genotype is compatible with a catalog canonical
/// genotype. Both are space-separated 8-locus tokens (e.g. "aa CC DD ee GG PP spsp rere").
/// "??" in either position is a wildcard. The first 8 tokens are compared; any trailing
/// Sls token is ignored (it is outside the base 8-locus contract).</summary>
private static bool GenotypePotentiallyMatches(string animalGeno, string catalogGeno)
{
var a = animalGeno.Split(' ', StringSplitOptions.RemoveEmptyEntries);
var c = catalogGeno.Split(' ', StringSplitOptions.RemoveEmptyEntries);
if (a.Length < 8 || c.Length < 8) return false;
for (int i = 0; i < 8; i++)
{
if (a[i] == "??" || c[i] == "??") continue;
if (!string.Equals(a[i], c[i], StringComparison.OrdinalIgnoreCase)) return false;
}
return true;
}
private static Gender InferGender(SourceAnimal a, HashSet<string> sires, HashSet<string> dams)
{
// Box colour (blue=male, white=female) is the authoritative breeder signal — prefer it

File diff suppressed because it is too large Load Diff

View File

@@ -0,0 +1,29 @@
using Microsoft.EntityFrameworkCore.Migrations;
#nullable disable
namespace GerbilManagerWebAPI.Migrations
{
/// <inheritdoc />
public partial class UniqueExternalRef : Migration
{
/// <inheritdoc />
protected override void Up(MigrationBuilder migrationBuilder)
{
migrationBuilder.CreateIndex(
name: "IX_Gerbils_ExternalRef",
table: "Gerbils",
column: "ExternalRef",
unique: true,
filter: "\"ExternalRef\" IS NOT NULL");
}
/// <inheritdoc />
protected override void Down(MigrationBuilder migrationBuilder)
{
migrationBuilder.DropIndex(
name: "IX_Gerbils_ExternalRef",
table: "Gerbils");
}
}
}

View File

@@ -807,6 +807,10 @@ namespace GerbilManagerWebAPI.Migrations
b.HasIndex("EnclosureId");
b.HasIndex("ExternalRef")
.IsUnique()
.HasFilter("\"ExternalRef\" IS NOT NULL");
b.HasIndex("LitterId");
b.HasIndex("OriginContactId");

View File

@@ -1,5 +1,6 @@
using System.Text.Json.Serialization;
using GerbilManagerWebAPI.Endpoints;
using Microsoft.AspNetCore.DataProtection;
using Microsoft.EntityFrameworkCore;
using Scalar.AspNetCore;
@@ -46,7 +47,17 @@ builder.Services.AddHttpClient<GerbilManagerWebAPI.Inbox.DraftReplyService>(
http => http.Timeout = TimeSpan.FromSeconds(60));
// INBOX-0: Gmail inbox. App Password encrypted at rest via Data Protection.
builder.Services.AddDataProtection();
// AR-3: persist the key ring so encrypted passwords survive image redeployments.
// In prod the path is mounted to a persistent volume (compose DataProtection__KeyRingPath).
// In dev (Aspire) keys live in the content root — ephemeral, which is fine there.
{
var keyRingPath = builder.Configuration["DataProtection:KeyRingPath"]
?? Path.Combine(builder.Environment.ContentRootPath, ".data-protection-keys");
Directory.CreateDirectory(keyRingPath);
builder.Services.AddDataProtection()
.PersistKeysToFileSystem(new DirectoryInfo(keyRingPath))
.SetApplicationName("GerbilManager");
}
builder.Services.AddScoped<GerbilManagerWebAPI.Inbox.MailSettingsService>();
builder.Services.AddScoped<GerbilManagerWebAPI.Inbox.IGmailMailReader, GerbilManagerWebAPI.Inbox.GmailMailReader>();
builder.Services.AddScoped<GerbilManagerWebAPI.Inbox.RequestSyncService>();

View File

@@ -15,9 +15,15 @@ TAG=latest
PGDATA_PATH=/mnt/SSD/gerbil/pgdata
PHOTOS_PATH=/mnt/SSD/gerbil/photos
BACKUPS_PATH=/mnt/SSD/gerbil/backups
# AR-3: Data Protection Key-Ring (Gmail-App-Passwort-Verschlüsselung)
KEYS_PATH=/mnt/SSD/gerbil/keys
# Backup-Rotation: Anzahl Tage (Standard: 7)
BACKUP_KEEP_DAYS=7
# Claude-API-Key fuer KI-Verkaufstext (FEAT-12a; leer lassen wenn nicht vorhanden)
ANTHROPIC_API_KEY=
# KI-Funktionen (Verkaufstext + Posteingang-Entwurf)
# Beliebiger OpenAI-kompatibler Anbieter — Optionen in docs/ai-provider.md
# Leer lassen = KI deaktiviert (kein Fehler, nur 503 AiKeyMissing)
AI__BaseUrl=
AI__ApiKey=
AI__Model=gemini-2.0-flash

View File

@@ -40,10 +40,17 @@ services:
ConnectionStrings__gerbilmanager: "Host=db;Port=5432;Database=gerbilmanager;Username=postgres;Password=${POSTGRES_PASSWORD}"
# Speicherort der hochgeladenen Fotos (NAS-Dataset gemounted unter /data/photos)
Photos__RootPath: /data/photos
# KI-Verkaufstext (FEAT-12a stub; leer lassen wenn kein Key vorhanden)
ANTHROPIC_API_KEY: "${ANTHROPIC_API_KEY:-}"
# AR-3: Data Protection Key-Ring (persistiert Gmail-App-Passwort-Verschlüsselung über Redeployments)
DataProtection__KeyRingPath: /data/keys
# AR-4: KI-Funktionen (Verkaufstext + Posteingang-Entwurf, Sektion AI; beliebiger OpenAI-kompatibler Anbieter)
# Anbieter-Optionen und Schlüssel-Beispiele: docs/ai-provider.md
# Leer lassen = KI deaktiviert (503 AiKeyMissing statt Fehler)
AI__BaseUrl: "${AI__BaseUrl:-}"
AI__ApiKey: "${AI__ApiKey:-}"
AI__Model: "${AI__Model:-gemini-2.0-flash}"
volumes:
- photos:/data/photos
- keys:/data/keys
depends_on:
db:
condition: service_healthy
@@ -101,6 +108,14 @@ volumes:
type: none
o: bind
device: "${PHOTOS_PATH:-/mnt/gerbil/photos}"
# AR-3: Data Protection key ring — persistiert Gmail-App-Passwort-Verschlüsselung.
# Muss ein persistentes NAS-Dataset sein (nicht dasselbe wie photos).
keys:
driver: local
driver_opts:
type: none
o: bind
device: "${KEYS_PATH:-/mnt/gerbil/keys}"
backups:
driver: local
driver_opts:

View File

@@ -40,6 +40,25 @@ npm run build
npm run preview
```
## Farbschlag-Katalog (AR-5)
Der Katalog lebt in `src/genetics/catalog.ts` (Single Source of Truth).
Nach jeder Änderung dort den Generator laufen lassen:
```bash
npm run gen:catalog
```
Erzeugt zwei Artefakte und committet beide:
| Datei | Notation | Verwendung |
|---|---|---|
| `src/genetics/colorVarietySeed.generated.json` | Klammer (`e[f]`, `c[chm]`) | UI-Dropdowns, Frontend-Suche |
| `src/genetics/colorVarietySeed.backend.json` | Frozen symbols (`ef`, `cchm`) | EF-Seed-Migrationen (Pam, DATA-Lane) |
Der vitest-Drift-Guard (`catalog-drift.test.ts`) schlägt fehl, wenn
`generated.json` nach einer Katalog-Änderung nicht aktualisiert wurde.
## E2E-Tests (QA-1, Playwright)
```bash
@@ -56,4 +75,4 @@ npx playwright test --project=phone # nur Smartphone-Viewport (390px)
überspringen sich selbst; die übrigen legen eigene Datensätze an.
- Beide Viewports (Smartphone 390px, Laptop 1280px) laufen für jede Spec;
alle Assertions prüfen die deutschen Oberflächentexte direkt aus
`src/strings/de.ts`.
`src/strings/de.ts`.

View File

@@ -0,0 +1,49 @@
/**
* Katalog-Generator — AR-5
*
* Erzeugt zwei Artefakte aus catalog.ts (Single Source of Truth):
*
* colorVarietySeed.generated.json — Display-Notation (Klammer: e[f]/c[chm]/c[h])
* → Quelle für UI-Dropdowns, Frontend-Suche.
*
* colorVarietySeed.backend.json — Frozen internal symbols (ef/cchm/ch)
* → Quelle für künftige EF-Seed-Migrationen (Pam).
* NICHT in Bracket-Notation ändern — Backend-Parser
* erwartet frozen symbols (CR-11-Matcher-Guardrail).
*
* Ausführen nach jeder Änderung an catalog.ts:
* npm run gen:catalog
*
* Der vitest-Drift-Guard (catalog-drift.test.ts) schlägt fehl, wenn
* generated.json veraltet ist — Fehler macht den fehlenden Generator-Lauf sichtbar.
*/
import { BASE_COLORS, CATALOG, representativeGenotype } from './src/genetics/catalog.ts'
import { LOCUS_ORDER } from './src/genetics/loci.ts'
import type { Genotype } from './src/genetics/genotype.ts'
import { writeFileSync } from 'fs'
/** Internal (frozen) display string — concatenates canonical allele symbols without bracket mapping. */
function toInternalString(g: Genotype): string {
return LOCUS_ORDER.filter(
(locus) => locus !== 'Sls' || !(g.Sls[0] === 'sl' && g.Sls[1] === 'sl'),
)
.map((locus) => (g[locus][0] + g[locus][1]).replace(/\?/g, '-'))
.join(' ')
}
// ── Display artefact (bracket notation) ─────────────────────────────────────
const displayPath = './src/genetics/colorVarietySeed.generated.json'
writeFileSync(displayPath, JSON.stringify(CATALOG, null, 2) + '\n')
console.log(`[gen:catalog] display → ${displayPath} (${CATALOG.length} rows)`)
// ── Backend artefact (frozen internal symbols) ───────────────────────────────
const backendSeed = BASE_COLORS.map((entry, i) => ({
name: entry.name,
...(entry.english !== undefined ? { english: entry.english } : {}),
canonicalGenotype: toInternalString(representativeGenotype(entry)),
sortOrder: i,
...(entry.image !== undefined ? { image: entry.image } : {}),
}))
const backendPath = './src/genetics/colorVarietySeed.backend.json'
writeFileSync(backendPath, JSON.stringify(backendSeed, null, 2) + '\n')
console.log(`[gen:catalog] backend → ${backendPath} (${backendSeed.length} rows)`)

View File

@@ -10,7 +10,8 @@
"preview": "vite preview",
"test": "vitest run",
"test:watch": "vitest",
"e2e": "playwright test"
"e2e": "playwright test",
"gen:catalog": "npx tsx gen-seed.mts"
},
"dependencies": {
"jszip": "^3.10.1",

View File

@@ -0,0 +1,24 @@
/**
* AR-5 Drift-Guard: colorVarietySeed.generated.json muss mit dem Live-Output
* aus catalog.ts übereinstimmen.
*
* Schlägt dieser Test fehl, wurde catalog.ts verändert ohne danach
* `npm run gen:catalog` auszuführen. Fix: `npm run gen:catalog` laufen lassen
* und die geänderten JSON-Dateien committen.
*/
import { readFileSync } from 'fs'
import { fileURLToPath } from 'url'
import { dirname, join } from 'path'
import { describe, it, expect } from 'vitest'
import { CATALOG } from '../catalog'
const __dir = dirname(fileURLToPath(import.meta.url))
describe('AR-5 Catalog drift-guard', () => {
it('colorVarietySeed.generated.json stimmt mit catalog.ts überein (sonst: npm run gen:catalog)', () => {
const jsonPath = join(__dir, '..', 'colorVarietySeed.generated.json')
const committed = JSON.parse(readFileSync(jsonPath, 'utf-8'))
// CATALOG is readonly — deep equality against the plain parsed array is sufficient.
expect(committed).toEqual(Array.from(CATALOG))
})
})

View File

@@ -222,8 +222,9 @@ describe('Farbschlag catalog', () => {
expect(CATALOG).toHaveLength(CATALOG_SIZE)
expect(CATALOG[0]).toMatchObject({ name: 'Pink Eyed White (PEW)', sortOrder: 0 })
// Every row has a non-empty canonical genotype display string and unique name.
// GEN-3h: bracket notation (e[f], c[chm], c[h]) allowed in tokens.
expect(new Set(CATALOG.map((c) => c.name)).size).toBe(CATALOG.length)
expect(CATALOG.every((c) => /^[A-Za-z?]+( [A-Za-z?]+){7}$/.test(c.canonicalGenotype))).toBe(true)
expect(CATALOG.every((c) => /^[A-Za-z[\]?-]+( [A-Za-z[\]?-]+){7}$/.test(c.canonicalGenotype))).toBe(true)
})
it('genotypeToFarbschlag (DATA-1 denormalization contract) returns the plain name', () => {
@@ -523,3 +524,99 @@ describe('GEN-3g: "-Hell" in variety name == cchm/ch het; hom == cchm/cchm', ()
expect(name('aa cchmch DD EE gg PP spsp rere')).toBe('Zobel-Hell')
})
})
describe('GEN-3h: breeder bracket-notation display + E-locus e-before-ef order', () => {
// ── Display symbols ────────────────────────────────────────────────────
it('ef displays as e[f], cchm as c[chm], ch as c[h]', () => {
// Fuchsschimmel: E=[ef,ef] hom
expect(toDisplayString(fromDisplayString('AA CC DD efef GG PP spsp rere'))).toBe(
'AA CC DD e[f]e[f] GG PP spsp rere',
)
// C-locus het: cchm + ch
expect(toDisplayString(fromDisplayString('aa cchmch DD EE GG PP spsp rere'))).toBe(
'aa c[chm]c[h] DD EE GG PP spsp rere',
)
// C-locus hom cchm
expect(toDisplayString(fromDisplayString('aa cchmcchm DD EE GG PP spsp rere'))).toBe(
'aa c[chm]c[chm] DD EE GG PP spsp rere',
)
})
// ── E-locus display order: E > e > e[f] ─────────────────────────────
it('Fuchsschimmel het pair {ef,e} displays as ee[f] (e before e[f])', () => {
// Stored canonical: [ef, e] (ef dominant over e in storage).
// Display must swap to [e, ef] per breeder convention.
const g = fromDisplayString('aa CC DD eef Gg Pp spsp rere')
expect(g.E).toEqual(['ef', 'e']) // storage order unchanged
expect(toDisplayString(g)).toBe('aa CC DD ee[f] Gg Pp spsp rere')
})
it('E+e stays Ee (E dominant over e, no swap needed)', () => {
expect(toDisplayString(fromDisplayString('aa CC DD Ee GG PP spsp rere'))).toBe(
'aa CC DD Ee GG PP spsp rere',
)
})
it('E+ef displays Ee[f] (E dominant stays first, ef renders as e[f])', () => {
expect(toDisplayString(fromDisplayString('aa CC DD Eef GG PP spsp rere'))).toBe(
'aa CC DD Ee[f] GG PP spsp rere',
)
})
// ── Julian oracle fixtures (HUMANQUESTION D3/D4) ─────────────────────
it('Tier C: oracle display string round-trips exactly (aa C- D- ee[f] Gg Pp spsp rere)', () => {
const display = 'aa C- D- ee[f] Gg Pp spsp rere'
const g = fromDisplayString(display)
expect(g.E).toEqual(['ef', 'e'])
expect(g.C).toEqual(['C', '?'])
expect(toDisplayString(g)).toBe(display)
// Farbschlag scope is outside GEN-3h; god confirmed colour is correct as-is.
})
it('Zuleika oracle: aa c[chm]c[h] DD Ee Gg PP spsp rere', () => {
const display = 'aa c[chm]c[h] DD Ee Gg PP spsp rere'
const g = fromDisplayString(display)
expect(g.C).toEqual(['cchm', 'ch'])
expect(g.E).toEqual(['E', 'e'])
expect(toDisplayString(g)).toBe(display)
})
it('Milka oracle: aa Cc[h] dd EE Gg P- Spsp rere', () => {
const display = 'aa Cc[h] dd EE Gg P- Spsp rere'
const g = fromDisplayString(display)
expect(g.C).toEqual(['C', 'ch'])
expect(g.D).toEqual(['d', 'd'])
expect(toDisplayString(g)).toBe(display)
})
// ── Parser accepts both forms ─────────────────────────────────────────
it('bracket input round-trips identically to internal-symbol input', () => {
expect(toDisplayString(fromDisplayString('AA c[chm]c[chm] DD EE GG PP spsp rere'))).toBe(
toDisplayString(fromDisplayString('AA cchmcchm DD EE GG PP spsp rere')),
)
expect(toDisplayString(fromDisplayString('AA CC DD e[f]e[f] GG PP spsp rere'))).toBe(
toDisplayString(fromDisplayString('AA CC DD efef GG PP spsp rere')),
)
expect(toDisplayString(fromDisplayString('AA CC DD ee[f] GG PP spsp rere'))).toBe(
toDisplayString(fromDisplayString('AA CC DD eef GG PP spsp rere')),
)
})
it('e[-] standalone: parses as [e,?], displays e-', () => {
const g = fromDisplayString('aa CC DD e[-] GG PP spsp rere')
expect(g.E).toEqual(['e', '?'])
expect(toDisplayString(g)).toBe('aa CC DD e- GG PP spsp rere')
})
it('CR-1a: Silvain oracle ee[-] parses without crash → [e,?], displays e-', () => {
// Real herdbook notation: ee[-] = fox allele e + unknown e-type second allele.
// The lookbehind rule strips the second e[-] → '?', leaving 'e?' for splitToken.
const input = 'aa c[chm]c[chm] Dd ee[-] Gg Pp Spsp'
const g = fromDisplayString(input)
expect(g.E).toEqual(['e', '?'])
expect(g.C).toEqual(['cchm', 'cchm'])
expect(g.D).toEqual(['D', 'd'])
expect(g.Sp).toEqual(['Sp', 'sp'])
expect(toDisplayString(g)).toBe('aa c[chm]c[chm] Dd e- Gg Pp Spsp rere')
})
})

View File

@@ -0,0 +1,406 @@
[
{
"name": "Pink Eyed White (PEW)",
"english": "Pink Eyed White",
"canonicalGenotype": "AA chch DD EE GG pp spsp rere",
"sortOrder": 0,
"image": "rotaugen-weiss-pew-d-sep-e-sep.jpg"
},
{
"name": "Hermelin",
"english": "Dark Tailed White",
"canonicalGenotype": "aa chch DD EE GG PP spsp rere",
"sortOrder": 1,
"image": "hermelin.jpeg"
},
{
"name": "Himalaya",
"english": "Himalayan",
"canonicalGenotype": "AA chch DD EE GG PP spsp rere",
"sortOrder": 2,
"image": "himalaya.jpg"
},
{
"name": "Zobel",
"english": "Sable",
"canonicalGenotype": "aa cchmcchm DD EE gg PP spsp rere",
"sortOrder": 3,
"image": "zobel.jpeg"
},
{
"name": "Rotaugenschimmel",
"english": "Red-Eyed Roan",
"canonicalGenotype": "AA CC DD efef GG pp spsp rere",
"sortOrder": 4,
"image": "rotaugen-schimmel.jpg"
},
{
"name": "Agouti",
"english": "Golden Agouti",
"canonicalGenotype": "AA CC DD EE GG PP spsp rere",
"sortOrder": 5,
"image": "agouti-mit-erklaerung-der-genloci.JPG"
},
{
"name": "Schwarz",
"english": "Black",
"canonicalGenotype": "aa CC DD EE GG PP spsp rere",
"sortOrder": 6,
"image": "schwarz.jpg"
},
{
"name": "Silberagouti",
"english": "Grey Agouti",
"canonicalGenotype": "AA CC DD EE gg PP spsp rere",
"sortOrder": 7,
"image": "silberagouti.jpg"
},
{
"name": "Anthrazit",
"english": "Slate",
"canonicalGenotype": "aa CC DD EE gg PP spsp rere",
"sortOrder": 8,
"image": "anthrazit.jpg"
},
{
"name": "Algierfuchs",
"english": "Dark-Eyed Honey",
"canonicalGenotype": "AA CC DD ee GG PP spsp rere",
"sortOrder": 9,
"image": "algierfuchs.jpg"
},
{
"name": "Blau",
"english": "Blue",
"canonicalGenotype": "aa CC dd EE GG PP spsp rere",
"sortOrder": 10,
"image": "blau-schwarz-dd.JPG"
},
{
"name": "Gold",
"english": "Argente Golden",
"canonicalGenotype": "AA CC DD EE GG pp spsp rere",
"sortOrder": 11,
"image": "gold.jpg"
},
{
"name": "Platin",
"english": "Lilac",
"canonicalGenotype": "aa CC DD EE GG pp spsp rere",
"sortOrder": 12,
"image": "platin.JPG"
},
{
"name": "Goldfuchs",
"english": "Yellow Fox",
"canonicalGenotype": "AA CC DD ee GG pp spsp rere",
"sortOrder": 13,
"image": "goldfuchs.jpg"
},
{
"name": "Rotfuchs",
"english": "Argente Nutmeg",
"canonicalGenotype": "aa CC DD ee GG pp spsp rere",
"sortOrder": 14,
"image": "rotfuchs.JPG"
},
{
"name": "dd Gold",
"english": "dd Argente Golden",
"canonicalGenotype": "AA CC dd EE GG pp spsp rere",
"sortOrder": 15,
"image": "gold-dd.jpg"
},
{
"name": "dd Platin",
"english": "dd Lilac",
"canonicalGenotype": "aa CC dd EE GG pp spsp rere",
"sortOrder": 16,
"image": "platin-dd.jpg"
},
{
"name": "Altweiss (REW)",
"canonicalGenotype": "aa CC DD EE gg pp spsp rere",
"sortOrder": 17,
"image": "altweiss-rew.jpeg"
},
{
"name": "Apricot (Blassfuchs)",
"canonicalGenotype": "AA CC DD ee gg pp spsp rere",
"sortOrder": 18,
"image": "apricot-blassfuchs.jpg"
},
{
"name": "Blaufuchs",
"canonicalGenotype": "aa CC DD ee gg PP spsp rere",
"sortOrder": 19,
"image": "blaufuchs.jpg"
},
{
"name": "C-Separator",
"canonicalGenotype": "aa CC DD ee gg pp spsp rere",
"sortOrder": 20,
"image": "c-separator.jpg"
},
{
"name": "Elfenbein",
"canonicalGenotype": "AA CC DD EE gg pp spsp rere",
"sortOrder": 21,
"image": "elfenbein.jpg"
},
{
"name": "Kohlfuchs",
"canonicalGenotype": "aa CC DD ee GG PP spsp rere",
"sortOrder": 22,
"image": "kohlfuchs.jpg"
},
{
"name": "Polarfuchs",
"canonicalGenotype": "AA CC DD ee gg PP spsp rere",
"sortOrder": 23,
"image": "polarfuchs.jpg"
},
{
"name": "Saphir",
"canonicalGenotype": "aa CC DD EE GG pp spsp rere",
"sortOrder": 24,
"image": "saphir.jpg"
},
{
"name": "Orangeschimmel",
"canonicalGenotype": "AA CC DD efef GG PP spsp rere",
"sortOrder": 25,
"image": "schimmel-orangeschimmel.jpg"
},
{
"name": "Topas",
"canonicalGenotype": "AA CC DD EE GG pp spsp rere",
"sortOrder": 26,
"image": "topas.jpg"
},
{
"name": "Platin-Hell",
"canonicalGenotype": "aa CC DD EE GG pp spsp rere",
"sortOrder": 27,
"image": "platin-hell.jpg"
},
{
"name": "Agouti dd",
"canonicalGenotype": "AA CC dd EE GG PP spsp rere",
"sortOrder": 28,
"image": "agouti-dd.jpg"
},
{
"name": "Silberagouti dd",
"canonicalGenotype": "AA CC dd EE gg PP spsp rere",
"sortOrder": 29,
"image": "silberagouti-dd.jpg"
},
{
"name": "Kohlfuchs dd",
"canonicalGenotype": "aa CC dd ee GG PP spsp rere",
"sortOrder": 30,
"image": "kohlfuchs-dd.jpg"
},
{
"name": "Anthrazit dd",
"canonicalGenotype": "aa CC dd EE gg PP spsp rere",
"sortOrder": 31,
"image": "anthrazit-dd.jpg"
},
{
"name": "Silberschimmel",
"canonicalGenotype": "AA CC DD efef gg PP spsp rere",
"sortOrder": 32,
"image": "silberschimmel.jpg"
},
{
"name": "Polarfuchsschimmel",
"canonicalGenotype": "AA CC DD efef gg PP spsp rere",
"sortOrder": 33,
"image": "polarfuchsschimmel.jpg"
},
{
"name": "Algierfuchsschimmel",
"canonicalGenotype": "AA CC DD efef GG PP spsp rere",
"sortOrder": 34,
"image": "algierfuchsschimmel.jpg"
},
{
"name": "Kohlfuchsschimmel",
"canonicalGenotype": "aa CC DD efef GG PP spsp rere",
"sortOrder": 35,
"image": "kohlfuchsschimmel.jpg"
},
{
"name": "Blaufuchsschimmel",
"canonicalGenotype": "aa CC DD efef gg PP spsp rere",
"sortOrder": 36,
"image": "blaufuchsschimmel.jpg"
},
{
"name": "Kohlfuchs, hell",
"canonicalGenotype": "aa CC DD ee GG PP spsp rere",
"sortOrder": 37,
"image": "kohlfuchs-hell.jpg"
},
{
"name": "Goldfuchs, hell",
"canonicalGenotype": "AA CC DD ee GG pp spsp rere",
"sortOrder": 38,
"image": "goldfuchs-hell.jpg"
},
{
"name": "Goldfuchsschimmel",
"canonicalGenotype": "AA CC DD efef GG pp spsp rere",
"sortOrder": 39,
"image": "goldfuchsschimmel.jpg"
},
{
"name": "Gold-Hell",
"canonicalGenotype": "AA CC DD EE GG pp spsp rere",
"sortOrder": 40,
"image": "gold-hell.jpg"
},
{
"name": "Blaufuchs, hell",
"canonicalGenotype": "aa CC DD ee gg PP spsp rere",
"sortOrder": 41,
"image": "blaufuchs-hell.jpeg"
},
{
"name": "Rotfuchsschimmel",
"canonicalGenotype": "aa CC DD efef GG pp spsp rere",
"sortOrder": 42,
"image": "rotfuchsschimmel.jpg"
},
{
"name": "Polarfuchs, hell",
"canonicalGenotype": "AA CC DD ee gg PP spsp rere",
"sortOrder": 43,
"image": "polarfuchs-hell.jpeg"
},
{
"name": "Kohlfuchsschimmel, hell",
"canonicalGenotype": "aa CC DD efef GG PP spsp rere",
"sortOrder": 44,
"image": "kohlfuchsschimmel-hell.jpg"
},
{
"name": "Rotfuchs, hell",
"canonicalGenotype": "aa CC DD ee GG pp spsp rere",
"sortOrder": 45,
"image": "rotfuchs-hell.jpg"
},
{
"name": "Kohlfuchs-Hell",
"canonicalGenotype": "aa CC DD ee GG PP spsp rere",
"sortOrder": 46,
"image": "kohlfuchs-hell-2.jpg"
},
{
"name": "Algierfuchs, hell",
"canonicalGenotype": "AA CC DD ee GG PP spsp rere",
"sortOrder": 47,
"image": "algierfuchs-hell.JPG"
},
{
"name": "Topas dd",
"canonicalGenotype": "AA CC dd EE GG pp spsp rere",
"sortOrder": 48,
"image": "topas-dd.jpg"
},
{
"name": "Blaufuchs dd",
"canonicalGenotype": "aa CC dd ee gg pp spsp rere",
"sortOrder": 49,
"image": "blaufuchs-dd.jpg"
},
{
"name": "Marder",
"canonicalGenotype": "aa cchmcchm DD EE GG PP spsp rere",
"sortOrder": 50,
"image": "marder.JPG"
},
{
"name": "Siam",
"canonicalGenotype": "aa cchmch DD EE GG PP spsp rere",
"sortOrder": 51,
"image": "siam-marder-hell.JPG"
},
{
"name": "Zobel-Hell",
"canonicalGenotype": "aa cchmch DD EE gg PP spsp rere",
"sortOrder": 52,
"image": "zobel-hell.jpg"
},
{
"name": "CP-Agouti",
"canonicalGenotype": "AA cchmcchm DD EE GG PP spsp rere",
"sortOrder": 53,
"image": "agouti-cp.jpg"
},
{
"name": "CP-Agouti-Hell",
"canonicalGenotype": "AA cchmch DD EE GG PP spsp rere",
"sortOrder": 54
},
{
"name": "CP-Silberagouti",
"canonicalGenotype": "AA cchmcchm DD EE gg PP spsp rere",
"sortOrder": 55,
"image": "silberagouti-cp.JPG"
},
{
"name": "CP-Silberagouti-Hell",
"canonicalGenotype": "AA cchmch DD EE gg PP spsp rere",
"sortOrder": 56
},
{
"name": "CP-Algierfuchs",
"canonicalGenotype": "AA cchmcchm DD ee GG PP spsp rere",
"sortOrder": 57,
"image": "algierfuchs-cp.jpg"
},
{
"name": "CP-Algierfuchs-Hell",
"canonicalGenotype": "AA cchmch DD ee GG PP spsp rere",
"sortOrder": 58
},
{
"name": "CP-Polarfuchs",
"canonicalGenotype": "AA cchmcchm DD ee gg PP spsp rere",
"sortOrder": 59,
"image": "polarfuchs-cp.jpg"
},
{
"name": "CP-Polarfuchs-Hell",
"canonicalGenotype": "AA cchmch DD ee gg PP spsp rere",
"sortOrder": 60
},
{
"name": "CP-Fuchs",
"canonicalGenotype": "AA cchmcchm dd ee GG PP spsp rere",
"sortOrder": 61
},
{
"name": "CP-Fuchs-Hell",
"canonicalGenotype": "AA cchmch dd ee GG PP spsp rere",
"sortOrder": 62
},
{
"name": "CP-Blaufuchs",
"canonicalGenotype": "AA cchmcchm dd ee gg PP spsp rere",
"sortOrder": 63
},
{
"name": "CP-Orangeschimmel",
"canonicalGenotype": "AA cchmcchm DD efef GG PP spsp rere",
"sortOrder": 64
},
{
"name": "CP-Orangeschimmel-Hell",
"canonicalGenotype": "AA cchmch DD efef GG PP spsp rere",
"sortOrder": 65
}
]

View File

@@ -2,35 +2,35 @@
{
"name": "Pink Eyed White (PEW)",
"english": "Pink Eyed White",
"canonicalGenotype": "AA chch DD EE GG pp spsp rere",
"canonicalGenotype": "AA c[h]c[h] DD EE GG pp spsp rere",
"sortOrder": 0,
"image": "rotaugen-weiss-pew-d-sep-e-sep.jpg"
},
{
"name": "Hermelin",
"english": "Dark Tailed White",
"canonicalGenotype": "aa chch DD EE GG PP spsp rere",
"canonicalGenotype": "aa c[h]c[h] DD EE GG PP spsp rere",
"sortOrder": 1,
"image": "hermelin.jpeg"
},
{
"name": "Himalaya",
"english": "Himalayan",
"canonicalGenotype": "AA chch DD EE GG PP spsp rere",
"canonicalGenotype": "AA c[h]c[h] DD EE GG PP spsp rere",
"sortOrder": 2,
"image": "himalaya.jpg"
},
{
"name": "Zobel",
"english": "Sable",
"canonicalGenotype": "aa cchmcchm DD EE gg PP spsp rere",
"canonicalGenotype": "aa c[chm]c[chm] DD EE gg PP spsp rere",
"sortOrder": 3,
"image": "zobel.jpeg"
},
{
"name": "Rotaugenschimmel",
"english": "Red-Eyed Roan",
"canonicalGenotype": "AA CC DD efef GG pp spsp rere",
"canonicalGenotype": "AA CC DD e[f]e[f] GG pp spsp rere",
"sortOrder": 4,
"image": "rotaugen-schimmel.jpg"
},
@@ -168,7 +168,7 @@
},
{
"name": "Orangeschimmel",
"canonicalGenotype": "AA CC DD efef GG PP spsp rere",
"canonicalGenotype": "AA CC DD e[f]e[f] GG PP spsp rere",
"sortOrder": 25,
"image": "schimmel-orangeschimmel.jpg"
},
@@ -210,31 +210,31 @@
},
{
"name": "Silberschimmel",
"canonicalGenotype": "AA CC DD efef gg PP spsp rere",
"canonicalGenotype": "AA CC DD e[f]e[f] gg PP spsp rere",
"sortOrder": 32,
"image": "silberschimmel.jpg"
},
{
"name": "Polarfuchsschimmel",
"canonicalGenotype": "AA CC DD efef gg PP spsp rere",
"canonicalGenotype": "AA CC DD e[f]e[f] gg PP spsp rere",
"sortOrder": 33,
"image": "polarfuchsschimmel.jpg"
},
{
"name": "Algierfuchsschimmel",
"canonicalGenotype": "AA CC DD efef GG PP spsp rere",
"canonicalGenotype": "AA CC DD e[f]e[f] GG PP spsp rere",
"sortOrder": 34,
"image": "algierfuchsschimmel.jpg"
},
{
"name": "Kohlfuchsschimmel",
"canonicalGenotype": "aa CC DD efef GG PP spsp rere",
"canonicalGenotype": "aa CC DD e[f]e[f] GG PP spsp rere",
"sortOrder": 35,
"image": "kohlfuchsschimmel.jpg"
},
{
"name": "Blaufuchsschimmel",
"canonicalGenotype": "aa CC DD efef gg PP spsp rere",
"canonicalGenotype": "aa CC DD e[f]e[f] gg PP spsp rere",
"sortOrder": 36,
"image": "blaufuchsschimmel.jpg"
},
@@ -252,7 +252,7 @@
},
{
"name": "Goldfuchsschimmel",
"canonicalGenotype": "AA CC DD efef GG pp spsp rere",
"canonicalGenotype": "AA CC DD e[f]e[f] GG pp spsp rere",
"sortOrder": 39,
"image": "goldfuchsschimmel.jpg"
},
@@ -270,7 +270,7 @@
},
{
"name": "Rotfuchsschimmel",
"canonicalGenotype": "aa CC DD efef GG pp spsp rere",
"canonicalGenotype": "aa CC DD e[f]e[f] GG pp spsp rere",
"sortOrder": 42,
"image": "rotfuchsschimmel.jpg"
},
@@ -282,7 +282,7 @@
},
{
"name": "Kohlfuchsschimmel, hell",
"canonicalGenotype": "aa CC DD efef GG PP spsp rere",
"canonicalGenotype": "aa CC DD e[f]e[f] GG PP spsp rere",
"sortOrder": 44,
"image": "kohlfuchsschimmel-hell.jpg"
},
@@ -318,89 +318,89 @@
},
{
"name": "Marder",
"canonicalGenotype": "aa cchmcchm DD EE GG PP spsp rere",
"canonicalGenotype": "aa c[chm]c[chm] DD EE GG PP spsp rere",
"sortOrder": 50,
"image": "marder.JPG"
},
{
"name": "Siam",
"canonicalGenotype": "aa cchmch DD EE GG PP spsp rere",
"canonicalGenotype": "aa c[chm]c[h] DD EE GG PP spsp rere",
"sortOrder": 51,
"image": "siam-marder-hell.JPG"
},
{
"name": "Zobel-Hell",
"canonicalGenotype": "aa cchmch DD EE gg PP spsp rere",
"canonicalGenotype": "aa c[chm]c[h] DD EE gg PP spsp rere",
"sortOrder": 52,
"image": "zobel-hell.jpg"
},
{
"name": "CP-Agouti",
"canonicalGenotype": "AA cchmcchm DD EE GG PP spsp rere",
"canonicalGenotype": "AA c[chm]c[chm] DD EE GG PP spsp rere",
"sortOrder": 53,
"image": "agouti-cp.jpg"
},
{
"name": "CP-Agouti-Hell",
"canonicalGenotype": "AA cchmch DD EE GG PP spsp rere",
"canonicalGenotype": "AA c[chm]c[h] DD EE GG PP spsp rere",
"sortOrder": 54
},
{
"name": "CP-Silberagouti",
"canonicalGenotype": "AA cchmcchm DD EE gg PP spsp rere",
"canonicalGenotype": "AA c[chm]c[chm] DD EE gg PP spsp rere",
"sortOrder": 55,
"image": "silberagouti-cp.JPG"
},
{
"name": "CP-Silberagouti-Hell",
"canonicalGenotype": "AA cchmch DD EE gg PP spsp rere",
"canonicalGenotype": "AA c[chm]c[h] DD EE gg PP spsp rere",
"sortOrder": 56
},
{
"name": "CP-Algierfuchs",
"canonicalGenotype": "AA cchmcchm DD ee GG PP spsp rere",
"canonicalGenotype": "AA c[chm]c[chm] DD ee GG PP spsp rere",
"sortOrder": 57,
"image": "algierfuchs-cp.jpg"
},
{
"name": "CP-Algierfuchs-Hell",
"canonicalGenotype": "AA cchmch DD ee GG PP spsp rere",
"canonicalGenotype": "AA c[chm]c[h] DD ee GG PP spsp rere",
"sortOrder": 58
},
{
"name": "CP-Polarfuchs",
"canonicalGenotype": "AA cchmcchm DD ee gg PP spsp rere",
"canonicalGenotype": "AA c[chm]c[chm] DD ee gg PP spsp rere",
"sortOrder": 59,
"image": "polarfuchs-cp.jpg"
},
{
"name": "CP-Polarfuchs-Hell",
"canonicalGenotype": "AA cchmch DD ee gg PP spsp rere",
"canonicalGenotype": "AA c[chm]c[h] DD ee gg PP spsp rere",
"sortOrder": 60
},
{
"name": "CP-Fuchs",
"canonicalGenotype": "AA cchmcchm dd ee GG PP spsp rere",
"canonicalGenotype": "AA c[chm]c[chm] dd ee GG PP spsp rere",
"sortOrder": 61
},
{
"name": "CP-Fuchs-Hell",
"canonicalGenotype": "AA cchmch dd ee GG PP spsp rere",
"canonicalGenotype": "AA c[chm]c[h] dd ee GG PP spsp rere",
"sortOrder": 62
},
{
"name": "CP-Blaufuchs",
"canonicalGenotype": "AA cchmcchm dd ee gg PP spsp rere",
"canonicalGenotype": "AA c[chm]c[chm] dd ee gg PP spsp rere",
"sortOrder": 63
},
{
"name": "CP-Orangeschimmel",
"canonicalGenotype": "AA cchmcchm DD efef GG PP spsp rere",
"canonicalGenotype": "AA c[chm]c[chm] DD e[f]e[f] GG PP spsp rere",
"sortOrder": 64
},
{
"name": "CP-Orangeschimmel-Hell",
"canonicalGenotype": "AA cchmch DD efef GG PP spsp rere",
"canonicalGenotype": "AA c[chm]c[h] DD e[f]e[f] GG PP spsp rere",
"sortOrder": 65
}
]

View File

@@ -74,6 +74,32 @@ export function wildType(): Genotype {
return out
}
/**
* GEN-3h: breeder bracket-notation display symbols.
* STORAGE symbols (ef / cchm / ch) are frozen; only the rendered form changes.
*/
const DISPLAY_SYMBOL: Readonly<Partial<Record<string, string>>> = {
ef: 'e[f]',
cchm: 'c[chm]',
ch: 'c[h]',
}
function displaySymbol(allele: string): string {
return DISPLAY_SYMBOL[allele] ?? allele
}
/**
* GEN-3h: E-locus display order — breeder convention is E > e > e[f].
* Storage/dominance order is E > ef > e; display swaps ef and e so that
* a Fuchsschimmel (E=[ef,e] stored) renders as "ee[f]" not "e[f]e".
*/
const E_DISPLAY_RANK: Readonly<Record<string, number>> = { E: 0, e: 1, ef: 2 }
function displayPair(locus: LocusKey, pair: AllelePair): AllelePair {
if (locus !== 'E') return pair
const rank = (x: string) => E_DISPLAY_RANK[x] ?? Number.MAX_SAFE_INTEGER
return rank(pair[0]) <= rank(pair[1]) ? pair : [pair[1], pair[0]]
}
/**
* Compact display string, e.g. "Aa CC Dd EE GG Pp spsp rere".
* The Sls locus is OMITTED when wild-type (sl/sl) so legacy 8-locus strings and
@@ -81,12 +107,18 @@ export function wildType(): Genotype {
* (e.g. "… spsp rere Slsl"). Round-trips: a missing Sls re-parses to sl/sl.
* GEN-3c: unknown alleles are STORED as '?' but DISPLAYED as '-' (breeder
* convention) — e.g. ['C','?'] renders "C-".
* GEN-3h: sub-alleles use breeder bracket notation (e[f], c[chm], c[h]);
* E-locus display order is E > e > e[f] (e before e[f] in het pairs).
*/
export function toDisplayString(g: Genotype): string {
return LOCUS_ORDER.filter(
(locus) => locus !== 'Sls' || !(g.Sls[0] === 'sl' && g.Sls[1] === 'sl'),
)
.map((locus) => (g[locus][0] + g[locus][1]).replace(/\?/g, '-'))
.map((locus) => {
const [a, b] = displayPair(locus, g[locus])
return displaySymbol(a) + displaySymbol(b)
})
.map((s) => s.replace(/\?/g, '-'))
.join(' ')
}
@@ -146,8 +178,19 @@ function normalizeToken(tok: string): string | null {
if (t === 'WP') t = 'Slsl'
t = t.replace(/S\(l\)/g, 'Sl').replace(/s\(l\)/g, 'sl')
t = t.replace(/Uw/g, 'G').replace(/uw/g, 'g')
// GEN-3c: '-' is the breeder's UNKNOWN marker on input; store internally as '?'
// (the frozen storage contract keeps '?'; only DISPLAY renders '-').
// GEN-3h: accept bracket display notation → canonical internal symbols.
t = t.replace(/e\[f\]/g, 'ef') // Schimmel allele display form → internal
t = t.replace(/c\[chm\]/g, 'cchm') // Colourpoint display form → internal
t = t.replace(/c\[h\]/g, 'ch') // Himalayan display form → internal
// CR-1a: allele-prefixed bracket-unknown like ee[-] (Silvain).
// When e[-] is PRECEDED by a letter it is the second unknown allele in a
// 2-allele token (e.g. ee[-] → e + e[-] → e + ?). Lookbehind strips only
// the e[-] part; the leading allele stays. Standalone e[-] falls through to
// the generic [-]→? rule below (which makes the bracket-dash a wildcard,
// leaving the leading allele intact for splitToken).
t = t.replace(/(?<=[A-Za-z])e\[-\]/g, '?')
t = t.replace(/\[-\]/g, '?') // bare/standalone bracket-unknown → wildcard
// GEN-3c: plain dash is the breeder's UNKNOWN marker on input; store internally as '?'.
t = t.replace(/-/g, '?')
return t
}

View File

@@ -973,7 +973,19 @@ def apply_conflict_decisions(merged, conflicts, path):
continue
a["resolvedByDecision"] = True
if d.get("genotype"):
a["genotype"] = gt.parse(d["genotype"])
# CR-10: validate the parsed genotype — a typo'd decision string yields empty
# mapped8locus and would silently blank the animal's genotype while marking it
# 'resolved'. Only apply if the parse produces non-empty loci.
parsed = gt.parse(d["genotype"])
if parsed.get("mapped8locus"):
a["genotype"] = parsed
else:
# Keep the existing genotype; flag as a warning in the report.
a.setdefault("decisionWarnings", []).append(
f"Ungültiger Override-Genotyp '{d['genotype']}'"
"konnte nicht geparst werden (mapped8locus leer). "
"Bestehender Genotyp behalten; Konflikt wurde trotzdem aufgelöst."
)
if d.get("farbschlag"):
a["farbschlag"] = d["farbschlag"]
a["farbschlagVariants"] = [d["farbschlag"]]

View File

@@ -280,6 +280,36 @@ check("gen.+v.d. name rejected", e.looks_like_animal_name("Victoria Welby gen. W
check("real Farbschlag accepted", not e.looks_like_animal_name("Kohlfuchsschimmel"))
check("real Farbschlag accepted 2", not e.looks_like_animal_name("Orangeschimmel, hell"))
# --- CR-10: malformed decision genotype must NOT blank the existing genotype ---
dec_cr10 = os.path.join(tempfile.gettempdir(), "decisions-cr10.json")
_json.dump({"resolutions": [
# Valid decision (genotype parses OK) -> should be applied
{"name": "Agouti OK", "dob": "01.01.2020", "decision": "test",
"genotype": "aa CC DD ee GG PP spsp rere", "source": "test"},
# Malformed genotype (typo'd) -> must NOT blank genotype; conflict still resolved
{"name": "Siamese Bad", "dob": "02.02.2020", "decision": "test",
"genotype": "BLÖDSINN!!!", "source": "test"},
]}, open(dec_cr10, "w", encoding="utf-8"))
merged_cr10 = [
{"id": "g1", "name": "Agouti OK", "dob": "01.01.2020", "conflict": True, "farbschlag": "", "death": "",
"genotype": {"mapped8locus": {"A": ["a","a"]}, "rawGenotype": "aa", "unmappedTokens": []}},
{"id": "g2", "name": "Siamese Bad", "dob": "02.02.2020", "conflict": True, "farbschlag": "", "death": "",
"genotype": {"mapped8locus": {"C": ["c^h","c^h"]}, "rawGenotype": "chmchm", "unmappedTokens": []}},
]
conflicts_cr10 = [{"id": "g1"}, {"id": "g2"}]
n_cr10 = e.apply_conflict_decisions(merged_cr10, conflicts_cr10, dec_cr10)
check("CR-10: valid decision genotype is applied (A-locus updated)",
merged_cr10[0]["genotype"]["mapped8locus"].get("C") == ["C","C"])
check("CR-10: malformed decision genotype NOT applied (C-locus preserved)",
merged_cr10[1]["genotype"]["mapped8locus"].get("C") == ["c^h","c^h"])
check("CR-10: malformed decision still un-quarantines the animal",
merged_cr10[1].get("conflict") is False)
check("CR-10: malformed decision adds a decisionWarning",
bool(merged_cr10[1].get("decisionWarnings")))
check("CR-10: apply returns correct resolved count (2 conflicts cleared)", n_cr10 == 2)
try: os.remove(dec_cr10)
except OSError: pass
# --- TOLERANT KC-MATCHER (IMPORT-BACKFILL): all clan spelling variants -> canon 'kleinechaote' ---
# Julian-Entscheidung: Zucht = Kleine Chaoten wenn 'klein'+'chaoten' ODER bekannte Abkürzungen.
# The v.d. fix: trailing \b after '.' failed when next char is ' ' (non-word), so